Mgen001277.1
Basic Information
- Insect
- Megalopta genalis
- Gene Symbol
- -
- Assembly
- GCA_011865705.1
- Location
- NW:1839300-1853458[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 0.12 6.3 6.6 0.8 2 23 133 154 132 154 0.91 2 20 8.9 4.7e+02 0.7 1.0 1 10 531 540 531 545 0.79 3 20 6.3e-05 0.0033 16.9 5.3 1 23 619 642 619 642 0.94 4 20 0.0061 0.33 10.6 0.2 5 23 649 668 648 668 0.95 5 20 0.21 11 5.8 1.8 2 23 675 696 675 696 0.96 6 20 0.26 14 5.5 0.6 1 20 723 742 723 744 0.90 7 20 0.048 2.6 7.8 5.5 1 22 822 843 822 843 0.96 8 20 6.7e-05 0.0036 16.8 1.4 1 23 850 873 850 873 0.96 9 20 2.2 1.2e+02 2.6 2.6 1 21 883 903 883 906 0.87 10 20 0.16 8.7 6.1 0.2 2 19 929 946 928 948 0.93 11 20 0.74 39 4.1 4.3 1 23 956 979 956 979 0.95 12 20 0.016 0.84 9.3 2.1 1 23 990 1013 990 1013 0.93 13 20 0.0022 0.12 12.0 0.1 1 20 1046 1065 1046 1067 0.94 14 20 0.0016 0.085 12.5 1.7 1 23 1106 1129 1106 1129 0.90 15 20 0.013 0.71 9.6 0.4 1 19 1159 1177 1159 1179 0.95 16 20 0.015 0.81 9.4 0.8 1 23 1189 1211 1189 1211 0.97 17 20 0.04 2.2 8.1 1.1 1 23 1221 1244 1221 1244 0.94 18 20 0.015 0.82 9.4 3.4 1 23 1311 1333 1311 1333 0.97 19 20 0.33 18 5.2 0.2 1 23 1342 1365 1342 1365 0.91 20 20 0.05 2.7 7.8 2.0 2 23 1473 1495 1473 1495 0.96
Sequence Information
- Coding Sequence
- ATGGCTCGAGTTTATGTATACGAACGCCCAGTCGAATCTATCCTGACGAATGTGTCCTTCTATGAGAAGCTGAATCATGTTACAGCTGAGCTGCAGATTAAACAAGAGCCACGTGACACGGATGACAATTGTCAGGACGGTACTTTTCCACTGGCAAATACCAATGCAAAAACTGCCATAACAGGTGAAACAATTGTTCAGAGGACGCAACTACTGGGCAATGTAAATAACAAAGAGAATAAGCTTGTATTATCTAAAGACCGTGctgatacaaatatatcagaCGCGGACGTTATGAATACGCTAAAGCGTAAAGGTTCTCCGTTCGAGGATTTGGAAGTGCCGAAGAAGAAGTGCGTTAGATTTAAGTCTCCGGAACCGATCAAAGGACGATTGGAATGTGCCGTgtgttttttaaactttaagTCGCTCAGAACATTAAAGAATCATTCGGACTATCACACCGAGGCGGTCGAGCCTACTTGTAATAAATGTCTTTCGCAATGTAAATCACCTCGTTTCTTGAAGGATCGCATTTGGATGAGTAGATGCAAAAGGTATTGTCGCTCCGGAAACGTGGCATTTTGCTGCCGTTTCTGTAATGTGAGATACTCGAAGAAATCGTATTTACAGTGTCACGTGTTCCATAAACACAATGAATTATTACCTTGTTCCGCAAAGGAATCTAATGATCGTAGTAAAACTGGTGAacgtagcaaaattaaagaaattaaaagggCTGATAAAATGAGGGAAAATGGTGAAATTAGTGAAAATGCGAGAagcagagaaaccagcaaaacCAGTGGAACTAGTAAAACCAGAGAAACTAGTAAAGCAAGAGAAACTAGTAAAATCGGAGAAACCAGTAAAACCGGAGAAACCAGTAAAACCAGTGAAACTGATAAAGCCAGTGAATTCCCATTCACAGAGGGCACTGATAGTCACGCAAGAAGTCCTGTACaacagaaagaaaataatgaagcCTGTCCTCCCACCAAAAGAATGAGACAAACGACTATGACCGAGTTTCTTATAGGGATCACTAAGATAACAGAAGATATTTTTCCGCAGAAAGTTGATGCTGCGAAAGAAACTCCGCAAAAGGCGATACCTAAACAAAATGGATCCCTGACACAGAATATTGATTTTCATGTGGAAACACCGAAAAGTAGCGTACCTAGACAATTGAAAAGCATACCTAAGTCACCTGATCTTCAAGAGTACGCCCGAAAGAAAATGGCAATTAGTCGAAGTGGGACGTCGATTAACGACGAAAGATCTACGCCAAATGGCAACACTGCAGGGAAAAGCAAACCATTTGTGAAAATACACATAGATTCCGACATGATGCAGCACATTTTCAATACGAAAGTAAAGGTCGAAGTAGAAGATGAATTCAGCGATTTCGCGTTACAAAATTACAATCTGCGACGCGCGACAAGAAGCAACATCGAGCAAccgtcgaataatttaaatacgaCGTCCGCGAGAAGACCTCGTAACAGAATTAGATTTAAAAGACGGCCGGCTAGGAAGATTAGAAAAAAGCCTCAGCATAAATTGACGGACGAGGAACTGAGGGCCAAATTCAAATGCAAAGACTGCAAACTTAACTTAGTTAGATGCGACATGGCCGCTAAGGCAGGAACTGCTGACGTCACTCGGTTCTCGGTGGGAGAGGACGAAGATATCGCAGAAATGTGGAGAAAGAATATGATGTTAAAGAGATTAAACATTCCGCTAGCCAAACCGAACGAGCCCATAACAGTGGAAGTTAACGAATCGGTCCAGACATCAGAAATGTCCAATGCACCCTGCGATGAGACAGCGAAAGCCAACTCGCGTACGCTGTTTCGGTGTAAAGTTTGCAAGAAATGTTTCTcctcgaagaaatatttacgcGAACATTTGGAGCTACAACACGTGTTCTACATATCGAGCATATGCGGCGTTATGTACAAAACGAAAATTGAATTGCAGAAACACTACATGAAGAGGCACGCCGGTTTCAAGCGCGCCCAGTGCTGCGTGTGTTTCGAGAAGTTCTCATCACCGACGATATTGAAGCAGCACCTCTTGCTGCACTGCATCCAAGTATTCCTACCGAAGCGCGACGGGCAACGCAACAAGAAATTGGCCAAGTGTAGGACCTCCGATAAGGAGTACTCGTGCAAGGCTTGCGGCAAGCGATTTTGGTTGAAGTCCCGTTTGCGGGAGCACCGAACACAGTGTAATAAAATGAGGACGAGAAACAAGCAGTCGCAAAAAGTGCGTAATCCCGAGAGAACTCCGACAGCGGAACGAGCATTGGACAACGCTCCACGGCCTAAGTTAGCCGCGATCAACGATCGTCCTTATAAGACAAAATCGGCGACAGTGATGCGACCGATGAGGTTGCTGAGGGGCGTCGCTTTAGCGAGGGGATACAACACAAACCATTCCGACGCGGACGAGAAGAAATTCTCCTGCACCATTTGCAACACGCACTTCaaaacgtttcaaaaattatgCATGCACGAACGGACCTACTCCAAAGTCGCCACGTACGTCTGCAAGAACTGCAACACCGCGTTCACCAGCGAGAGATTACTCCGGAATCACCGTCGAGACACTCACGCGGTCGACATTCTTCGAGAGTTCAAGTACTTCTGCACGTTCTGCACCCAGGGCTTCTCGAAGAAGATCAGCGTTCTTATTCACACGGGACACTTCCATGCTGGTCAGACATCCATCATTCCCAGCTCGTATTTGGACACCAACCAAGACTGGGAGGTGAGCAAAGTGTGCAGCGTGTGCAATCTGGTGTTCGAGTCCAGCGAACGGTTCACCCAGCACAATATGTTCTACTACAAGGGTCAAATATTCACCTGCACGTTCTGCGGCAGTATCTTCCACGGGATGTACACGCTGCACAATCACATTAAATTCGAGCACAACACGGAAGATATGAAGAGACAGTACAAGTTCACGTGCGACGTCTGCGACGAGGGCTTCACCCTGGAGTCACAGTACCATGCTCATAAATCCCACGTGCATTCGGTGTCGCGTGTTGGATCTCCGCAGGAGCTGCGGGATCATACCTACGTGATAGCGGCCGTGAACGCGGTATCGACGAACGGACCGATTCCGAAATACAACTGCGACATTTGCCACGCGAGTTTCGCGGTCGAAGAAGAGCTGCGTCGACACAAGCTGGAGTACACCAATGACGGCGATTACCTATGCAGTTACTGTGCCAGAAGATGCCTTACAAACGACATTCTCAGCAAGCACGAGAGCTCGTCCCACGCCCGCTCCAACTTCGCCAATTGTTACAACTGTCGCTACTGCGAGGAAGCGTTCCGCGACAGTACAGAACTGAAGTCTCACGAAGCACACTTTCACCCGAGGATCAGCGATCCTCATCGTGACAGCACGAACCAAACGATCGCGAACGAAACTGCTGAAGCAGCCGAAGGCGCCACAGACGCTTTCTCCTGCACCATTTGTGGCGCAAAGTTCGAGAgctatgaaaaattgaattatcattCCCTGGAATACTCGAGCGAACCTAAATTCTTGTACAATTGCCTAATTTGCAAACGTCGTTTCCCGGAGCTGTATCGCCTGGAGGTCCACAAATTAAAACACTCGAATTTGAACTTCATTCTGTCCGAATATCACTGCCCCGTATGTCGTGAAGGATTCGAAAATGAGACGAATGTCTGGATGCATGTGATGCACTTCCACTCGAACACGGAGATCGAGAAACCGGTGAACAATGATGTTCAGAACGCGCAACACGTCGAACAAAATGCCGTCGAGTCTAAGTCGGTTTCGAACGCTCGATCAAGGAAGAAGTTCACGATGTGTGTCGACTGTATGGTGACGTTTAATTCCGAGAGGGCGCTGTTCTATCACAAAGCGCACTACACGGACGCGGGGGACCATGTCTGCGAGCAGTGCGGTAGGAAATTCCTGTTCCTGAAGCTGCTGAAGCAACACTTGAAGAGACATGCTGCTGGCATCGGGCGTCTGAAGTACACGTGTCCCGGGTGCGACGACAGATTCGGCAACGCGGTGGCCAGATACCAGCATATCATTCATTTGCACGGAAGAAACATGTGGAAGAACGAGGTTCTTCATCCTATGCTGGTTCAGAACGATCCCGAAGGCGCTGTCGAGATACTATGCGACGAGAAACGCGACACACCGTCGCCTGGAGCACGCACTCCAGCAGACAAGTCGATTCCCCCTGCGAATAGCGAGCCTGTCGATGCAACCAGTTCCCTGAACGAATGTAGCGACAGTCAGGAAAAGTCCTCGTCAACAAGCAATTGGCTGGCGGATGCGAGCGAGCAGGAGGTACAGATCGAAGATGCGAGCGTGCAGGAGGTACAGATCGAAGATGCAAGCGTGCAGGCTTTGTATGAGACCTGTCCGGTCTGTAACCTGAGGTGTTCGTCGTTGGAGATGTTCGTGACGCATTTGAAATATAAGCACGGTCAGGGAATTAAGAAGCCGGTCGCCAACTCGCCCCTGCCTTCACCAGAGCACGTCGGCTGTTCGACCGATAGCATCACCTCCGCCAAGGAAGATGACACACATCTGAACGAATCGCGTACATGCAACGAGGAAGCTGCTGCTCAACCCTCGGAGGAAGATGCCGATGTGGTGGAAGTCATTTGGGAAAAAAAGGCGAATGCTGTTAAACAGATCGAAGAACCAGACGACGATGAGGTTCATATTTTGTGCTGTAGCGAGCGCGCATCGATCGTTAACTATGACAAAACGGTATCGATGCCTGAACAAAATCGGGCTAATTGTGATAACAAGCTGAGGATCTCGCCAGCTGAAGATTTCACCAAGATAATGTAG
- Protein Sequence
- MARVYVYERPVESILTNVSFYEKLNHVTAELQIKQEPRDTDDNCQDGTFPLANTNAKTAITGETIVQRTQLLGNVNNKENKLVLSKDRADTNISDADVMNTLKRKGSPFEDLEVPKKKCVRFKSPEPIKGRLECAVCFLNFKSLRTLKNHSDYHTEAVEPTCNKCLSQCKSPRFLKDRIWMSRCKRYCRSGNVAFCCRFCNVRYSKKSYLQCHVFHKHNELLPCSAKESNDRSKTGERSKIKEIKRADKMRENGEISENARSRETSKTSGTSKTRETSKARETSKIGETSKTGETSKTSETDKASEFPFTEGTDSHARSPVQQKENNEACPPTKRMRQTTMTEFLIGITKITEDIFPQKVDAAKETPQKAIPKQNGSLTQNIDFHVETPKSSVPRQLKSIPKSPDLQEYARKKMAISRSGTSINDERSTPNGNTAGKSKPFVKIHIDSDMMQHIFNTKVKVEVEDEFSDFALQNYNLRRATRSNIEQPSNNLNTTSARRPRNRIRFKRRPARKIRKKPQHKLTDEELRAKFKCKDCKLNLVRCDMAAKAGTADVTRFSVGEDEDIAEMWRKNMMLKRLNIPLAKPNEPITVEVNESVQTSEMSNAPCDETAKANSRTLFRCKVCKKCFSSKKYLREHLELQHVFYISSICGVMYKTKIELQKHYMKRHAGFKRAQCCVCFEKFSSPTILKQHLLLHCIQVFLPKRDGQRNKKLAKCRTSDKEYSCKACGKRFWLKSRLREHRTQCNKMRTRNKQSQKVRNPERTPTAERALDNAPRPKLAAINDRPYKTKSATVMRPMRLLRGVALARGYNTNHSDADEKKFSCTICNTHFKTFQKLCMHERTYSKVATYVCKNCNTAFTSERLLRNHRRDTHAVDILREFKYFCTFCTQGFSKKISVLIHTGHFHAGQTSIIPSSYLDTNQDWEVSKVCSVCNLVFESSERFTQHNMFYYKGQIFTCTFCGSIFHGMYTLHNHIKFEHNTEDMKRQYKFTCDVCDEGFTLESQYHAHKSHVHSVSRVGSPQELRDHTYVIAAVNAVSTNGPIPKYNCDICHASFAVEEELRRHKLEYTNDGDYLCSYCARRCLTNDILSKHESSSHARSNFANCYNCRYCEEAFRDSTELKSHEAHFHPRISDPHRDSTNQTIANETAEAAEGATDAFSCTICGAKFESYEKLNYHSLEYSSEPKFLYNCLICKRRFPELYRLEVHKLKHSNLNFILSEYHCPVCREGFENETNVWMHVMHFHSNTEIEKPVNNDVQNAQHVEQNAVESKSVSNARSRKKFTMCVDCMVTFNSERALFYHKAHYTDAGDHVCEQCGRKFLFLKLLKQHLKRHAAGIGRLKYTCPGCDDRFGNAVARYQHIIHLHGRNMWKNEVLHPMLVQNDPEGAVEILCDEKRDTPSPGARTPADKSIPPANSEPVDATSSLNECSDSQEKSSSTSNWLADASEQEVQIEDASVQEVQIEDASVQALYETCPVCNLRCSSLEMFVTHLKYKHGQGIKKPVANSPLPSPEHVGCSTDSITSAKEDDTHLNESRTCNEEAAAQPSEEDADVVEVIWEKKANAVKQIEEPDDDEVHILCCSERASIVNYDKTVSMPEQNRANCDNKLRISPAEDFTKIM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -