Basic Information

Insect: Megalopta genalis
Gene Symbol: -
Assembly: GCA_011865705.1
Location: NW:12469-25155[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.00018 0.0097 15.4 2.0 1 21 82 102 82 103 0.94

2 11 0.00022 0.012 15.2 2.8 1 23 111 134 111 134 0.97

3 11 0.00048 0.026 14.1 1.1 1 21 197 217 197 218 0.95

4 11 0.00014 0.0076 15.8 1.1 1 23 226 249 226 249 0.97

5 11 2.5e-05 0.0014 18.1 1.9 1 21 295 315 295 316 0.96

6 11 0.00029 0.016 14.8 3.7 1 23 324 347 324 347 0.97

7 11 0.0052 0.28 10.9 5.5 1 23 388 411 388 411 0.98

8 11 0.015 0.79 9.4 0.5 1 21 556 576 556 577 0.96

9 11 0.0061 0.32 10.6 0.3 1 23 585 608 585 608 0.97

10 11 0.00073 0.039 13.5 0.1 1 21 641 663 641 664 0.96

11 11 0.00045 0.024 14.2 2.4 1 23 672 695 672 695 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.00018	0.0097	15.4	2.0	1	21	82	102	82	103	0.94
2	11	0.00022	0.012	15.2	2.8	1	23	111	134	111	134	0.97
3	11	0.00048	0.026	14.1	1.1	1	21	197	217	197	218	0.95
4	11	0.00014	0.0076	15.8	1.1	1	23	226	249	226	249	0.97
5	11	2.5e-05	0.0014	18.1	1.9	1	21	295	315	295	316	0.96
6	11	0.00029	0.016	14.8	3.7	1	23	324	347	324	347	0.97
7	11	0.0052	0.28	10.9	5.5	1	23	388	411	388	411	0.98
8	11	0.015	0.79	9.4	0.5	1	21	556	576	556	577	0.96
9	11	0.0061	0.32	10.6	0.3	1	23	585	608	585	608	0.97
10	11	0.00073	0.039	13.5	0.1	1	21	641	663	641	664	0.96
11	11	0.00045	0.024	14.2	2.4	1	23	672	695	672	695	0.97

Sequence Information

Coding Sequence: ATGGCAAAGCCAAGCGGCAAGGCCGCGCGGCAGAAGCCAAGGCACCGAGCGAAGGCGAAAGCCAAGCGATCGCTGCATTGGCATGCCGCGCGGCAGAAGCCAAGGCACCGAGCGAAGGCGAAAGCCAAGCAATCGTTGCCTCGTCTCCATTTTCCAGAGAAGCTACCGAATTACGTCGACGGTTACGGATGGAGCCGTGGCGCGGCGGTCCGTAACCCGGCCCGGCCGCGGCCCCCCCTCCAGCACATCTGCCCGAAGTGCGGCAGATCGTTCAACTGGCGCTACAATCTCCAGCACCATTTGAAGTACGCTTGCGGACAGTCGCCGCGATTCAACTGTCCGTATTGCCCTTACAGGACGAAGCACACGTCGAACGTTAGGGCCCACGTGCGCAGGAAGCATCCCGATAAAGAGGTCTACGTCATCGATCTGATGACCGTCGCCCAGTCGGGGAAGAATTGTGTGCACTGTGCAGAGCCGTCGTACCTAGTGGTGCCCCACAGGATGAAGAACACGTATTGGGTGCAATATCCGCAGCGGCGGTCCGTCCCGGCGACGAAGgaccaccaccaccagcagCCGCAGAGATTTCCCTGCGGGAACTGTCGCAGCGTGTTTAGCCGGAAATACAATCTCCAGTATCATTTGAAGTTCGAGTGCGGCCAGTCGCCGCGGTTCAATTGTCCCTACTGCGTGTACAGGACGAGGCATCCGTCGAACGTGCGCGCCCACGTTCGCAGGATCCATCCTGGGAACACGGTTTACGTGGTGGACGTGAGTGCGCAGCACCGGTCAACGGCGGCGATGGACGCGACACCGTGTTACGGCGGCGGCCAACGTTGCGACTACGATCACGCACGGAACAACGAGCTGAGGAGGAGTTATCCTTGTCACAAGTGCGGTAACGTTTTCACGCGTAGGAACAATTTGTACAATCATCTGAAGTTCCAGTGCGGACAGCTGCCCAGGTTCAACTGTCCTTACTGCTCGTATCGGACGAGGCACTCGTCGAACGTGCGGTCGCACGTGCGCAGGATGCACCCTGGCCAGAGGGTGTTCGTGCTGGACGTGAGGGGCGAGCAGGAGTGCCAGCAGCAGTGGGCCTCCCAGAAGTACTCGCTGAACCGGCACCTGACCTACGAGTGCGGCCAGGAGCCACGGTTCAAGTGCCCGCACTGCGAGTACCGTTGCAAGAAGTCGGCCAACGTCTACGAGCACGTCCGGAGACGGCACAAGGACTGCGAGGTGTACGCGATCGACATCCTGAAACCACCCTTGCCCGACCTGCGACCGCACCTTCAAGCGGAAGAACAGCCTGAGCAGACACCTGTTGTACGCCTGCGGCCAGAATCCTCGGTTCAAGTGTCCTTACTGCTGGTACCGGTGCAAGCTCCGCAGCAACGTCTACAGACACGTCCGTACGACGCACAAGAAGCGCGAGGTGTTCGCCATGGACGTCGTCAGGCACTGCGTGAACAAGCCGAAGTGAAGTCCTCGGGACGGTCCCCAGCGTGTCCTCTATTTCAGCTCGTCTCGCTCGGCGCCCGCACCTCCGAGACAATGATCCAGCAGCGGCGGCGAACGATCCACGATCCGTTGTACATCACCAGCGCCCGTTACAAGAAGCTGCGTGTCCGCCGGTTAGTCGACATCTCGCACAAGAAGTTCCCGTGCCCGAACTGTCCGAGCGTGTTCGTCTGGAAGTGCACCCTGAAGAGGCACCTGAGGAACGAGTGCGGCAAAGAACCGAAGTTCAATTGCCCTTACTGCGACTACCGTGGCAAATGGAAGGCGAACGTGATCAGGCACATCAAACGGGTCCACAAAGACTGCAATATCTACGTTTACAACAGCTCCTTCCAGAAGCTGTGGCCGTTTAGCAAGATCGGGATGCCGGCGAGACGGCCGCACGAGAACGTGTACGTCTGCCCGAACCCGAATTGCGCCAAGTCGTTCAGTTGGAAGGGGAACCTGAACAGGCACCTCAGATACGAGTGCGGACTCCAGCCGCGGTTCAAGTGCCCGTACTGCGAGTATCGGTGCAAGGTAAAGGGGGACGTGAACAAGCATATCATCAGGAAGCATCCGGGCTTCGCTCTCTACGTCGTCGATCTCTTCCTATCCTGA
Protein Sequence: MAKPSGKAARQKPRHRAKAKAKRSLHWHAARQKPRHRAKAKAKQSLPRLHFPEKLPNYVDGYGWSRGAAVRNPARPRPPLQHICPKCGRSFNWRYNLQHHLKYACGQSPRFNCPYCPYRTKHTSNVRAHVRRKHPDKEVYVIDLMTVAQSGKNCVHCAEPSYLVVPHRMKNTYWVQYPQRRSVPATKDHHHQQPQRFPCGNCRSVFSRKYNLQYHLKFECGQSPRFNCPYCVYRTRHPSNVRAHVRRIHPGNTVYVVDVSAQHRSTAAMDATPCYGGGQRCDYDHARNNELRRSYPCHKCGNVFTRRNNLYNHLKFQCGQLPRFNCPYCSYRTRHSSNVRSHVRRMHPGQRVFVLDVRGEQECQQQWASQKYSLNRHLTYECGQEPRFKCPHCEYRCKKSANVYEHVRRRHKDCEVYAIDILKPPLPDLRPHLQAEEQPEQTPVVRLRPESSVQVSLLLVPVQAPQQRLQTRPYDAQEARGVRHGRRQALREQAEVKSSGRSPACPLFQLVSLGARTSETMIQQRRRTIHDPLYITSARYKKLRVRRLVDISHKKFPCPNCPSVFVWKCTLKRHLRNECGKEPKFNCPYCDYRGKWKANVIRHIKRVHKDCNIYVYNSSFQKLWPFSKIGMPARRPHENVYVCPNPNCAKSFSWKGNLNRHLRYECGLQPRFKCPYCEYRCKVKGDVNKHIIRKHPGFALYVVDLFLS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -