Mgen001307.1
Basic Information
- Insect
- Megalopta genalis
- Gene Symbol
- -
- Assembly
- GCA_011865705.1
- Location
- NW:220570-235196[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.008 0.43 10.3 1.5 2 23 407 429 406 429 0.93 2 14 0.00015 0.0081 15.7 0.1 1 23 435 457 435 457 0.96 3 14 2.4e-06 0.00013 21.3 3.4 1 23 463 485 463 485 0.96 4 14 0.00011 0.0058 16.2 1.9 1 23 494 516 494 516 0.97 5 14 0.00013 0.0071 15.9 4.0 1 23 522 544 522 544 0.97 6 14 3.6e-07 1.9e-05 23.9 1.6 1 23 549 571 549 571 0.97 7 14 0.042 2.2 8.0 7.3 1 23 578 600 578 600 0.99 8 14 0.00051 0.027 14.0 0.9 2 23 620 641 619 641 0.97 9 14 0.00086 0.046 13.3 0.2 2 23 648 670 647 670 0.96 10 14 0.00066 0.035 13.7 0.3 1 23 676 698 676 698 0.96 11 14 0.00022 0.012 15.2 3.2 1 23 704 726 704 726 0.98 12 14 3.4e-07 1.8e-05 24.0 1.0 1 23 732 754 732 754 0.98 13 14 5.5e-06 0.00029 20.2 1.0 1 23 760 782 760 782 0.98 14 14 0.00039 0.021 14.4 0.3 2 23 788 809 787 809 0.96
Sequence Information
- Coding Sequence
- atgaaaGTAATTTGCGCCGGGAAGAATTGTAAATACTCCTCGGAAACTGAAGACTCAAcacatgttatttttattaattttcctaATGATGATATGTCTAAAATATGGGCACACAATTGTGGCAGAACGGATCTTCTAGCAAAATCTAATGAagaattacatttaaattattatgtatgttCTCATCATATCGCAGATCACCATTATATAAACAAAACTGACCCGATTATAATAGACCAACATGCTGTTCCTACATTATTTGGATCAGACAATATGGCAAAaggaaatgtacaaaatatgttTATCAGAAATAAACAGATAGAAGCAGCAGACAATGTGGAATTAACAGATTGTGATATAGATGTTGAGATGGATCAGTATCAAGATATTACTAttagattttcaaatttatgtAGAATATGCGGAGGATCCTGTTTACATGGTATAGAAATTTTCACTGAAAAAGGTTTagagttaaaaataaaagaaaaaatgaatttgcaCTTACCAATCAATCCTAATATGGAAGATTTAATGCCACAAAAGATATGTACCAAATGTTATGATAATTTGGAAACAGCGCATTTATTAGTTACAACATCTTTAAAAACTGATATGAGATTGAAAAAGTTTCTAAATATCAAAGATGGATTAAGTTATGATAATAAATacgatgaaataataaaaatgtgttcttcAGAATTAATAAGCGAGATGTACATGAATAAAACAATTCATTCTATGTCTATAGAATTATCATCTAGTGATGGACAGGAAATCATAATGAATCAGGATGTGCCCACAAAATTGGATTACCTAGAAGATATTGAGAGAAAAAAAGCTAGCTCTCCGAACaatataagaaaagaaatacagtCTGAATTAAATAGACTTATTGAATCGTACAGTGACGAAAACAAAGAAGATAGCTCTATAAACGAAATTGTAACGAACCATATATCAAATGGTATTAATGACATTGCATCTTTCCATTGTAAAGATTCCTTTAAAACCCGAGAAATATTTGAGAATCACAAAATATTATGCAACgaagatgaaataataatagagaaacagaaagaaataacTAGTAGTATAAGTATCAATGAACTTTCTAATTGCAAATCTTTTCAAGAGGAAAATTACAAAATCCCAGATAAACTATACACAACAGAAGAAGACTGcaatactaaaaaaaatatagcgGAAACAAATAAGAAATGCGGTCACTGTCAATCTATTTACAGTACCAAAAAGGAACTATTAAATCACATTGCAGAACGTCACGAAAGTCAACTATTATTCGCGTGTCTTATCTGTGATAAAAGTTATGAGAAATGGTCTAGTTTAGACGTTCACGAAGCTACGCATCGAATAGATAAACCCTATCTATGTGATTTATGTGGAAAGAGCTTCAAACACTCTAATAATTTGAGGGGTCACAAAAGAACTCATTTGGATGACTCGAGAAAGAAACGGCACGTCTGTGAAATTTGTGGGAATGCGTTTAGGTCTAGATTTCATTTGGGAGAACACATGAACCAGCACAACGGCAACAAACCCTACTGTTGCGAAAAATGTGGCAAAGCTTTTTACAAGAGGATACAGTTAAGACAACACAAATTGTCTCATGGCAtgaataaacatgtttgtccGATATGTGGAACGTCTTTCAATCGTAAAGGAAATATGAATACTCACCTTAAAAGGCATAGTAATGGTGATGGAATATACACCTGTAGTATTTGTGCGTGTAAATGTAAATCGATGAGCCAGTTAAAATTGCATCGCAAAAAACATACGGAGGACAGTGTTATGGTCAGTActgcaaaaaagtattccgatCGAACAGAGTGGCAATGTAAGATTTGTAACCAGTTGTTTACCATACGATctgattttttaaatcacgAACGCACGCATAAAGGAGAAAGGAGCGTGGAGTGTGATATTTGTGGCAAACAATTGGCTAGTAAAAATTCTTTGATTTATCATAAGAAATCTGTGCATTCCAAGGAAAGGCCTCACATGTGTCAATATTGTGGGGAAGCGTTTGTTTCTAAAGAAGCACGTCTGATACATGAAAGGATCCATACTGGAGAACGACCTTACGTTtgcaaaatatgtaaaatggaaTACAAGTGTTCCAGTAATCTCAATCAGCATATGAAAATTCATTCGGATGTTAAACCCCATAGGTGTATGTATTGTGGCAAAAGTTTCACACGTAAGGGTGCATTGGTTATACATGTAAGAATACATACCGGTGAAAAGCCATTTCCTTGCGAAACATGCGGCAGAGGATTTTCACAAAAAAACGATATGCTGAAGCATACGAAAACGCACTATGCGAAGGTATTACGATGTGAGAAATGCAACGAAGTTTTCGCGAgaagaaaagatattttaaagCACCTAGTGATGCATAAACAAAGTGATCTTATAATTTAA
- Protein Sequence
- MKVICAGKNCKYSSETEDSTHVIFINFPNDDMSKIWAHNCGRTDLLAKSNEELHLNYYVCSHHIADHHYINKTDPIIIDQHAVPTLFGSDNMAKGNVQNMFIRNKQIEAADNVELTDCDIDVEMDQYQDITIRFSNLCRICGGSCLHGIEIFTEKGLELKIKEKMNLHLPINPNMEDLMPQKICTKCYDNLETAHLLVTTSLKTDMRLKKFLNIKDGLSYDNKYDEIIKMCSSELISEMYMNKTIHSMSIELSSSDGQEIIMNQDVPTKLDYLEDIERKKASSPNNIRKEIQSELNRLIESYSDENKEDSSINEIVTNHISNGINDIASFHCKDSFKTREIFENHKILCNEDEIIIEKQKEITSSISINELSNCKSFQEENYKIPDKLYTTEEDCNTKKNIAETNKKCGHCQSIYSTKKELLNHIAERHESQLLFACLICDKSYEKWSSLDVHEATHRIDKPYLCDLCGKSFKHSNNLRGHKRTHLDDSRKKRHVCEICGNAFRSRFHLGEHMNQHNGNKPYCCEKCGKAFYKRIQLRQHKLSHGMNKHVCPICGTSFNRKGNMNTHLKRHSNGDGIYTCSICACKCKSMSQLKLHRKKHTEDSVMVSTAKKYSDRTEWQCKICNQLFTIRSDFLNHERTHKGERSVECDICGKQLASKNSLIYHKKSVHSKERPHMCQYCGEAFVSKEARLIHERIHTGERPYVCKICKMEYKCSSNLNQHMKIHSDVKPHRCMYCGKSFTRKGALVIHVRIHTGEKPFPCETCGRGFSQKNDMLKHTKTHYAKVLRCEKCNEVFARRKDILKHLVMHKQSDLII
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00184092;
- 90% Identity
- -
- 80% Identity
- -