Mgen009346.1
Basic Information
- Insect
- Megalopta genalis
- Gene Symbol
- -
- Assembly
- GCA_011865705.1
- Location
- NW:992847-995553[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 6.3e-08 5.9e-05 21.8 0.0 2 34 56 87 55 94 0.90 2 2 3 2.8e+03 -2.8 0.0 5 17 401 413 401 416 0.80
Sequence Information
- Coding Sequence
- ATGCCACCCAAATTAAGAGGTgggaaaaataatgaaaaatatgagacaattaaaaaaatgcggCCGAGTgttgaagaaaataatgttaagaGTAATGTAAAAAGTAATATAGTCTTCAGAAAGTGCAATcaacaaaagataaaaaaacaTAGGAAGAATTATGCTCCTGAATCTCTTGAGAAAGCTGTCAAAGCAGTAAATGAAGGCATTAGTTTGAGAAAAGCAGCTCAAATGCATTGTGTTCCTGTAACTTCTATCTTCAGAGCAGCGAAGAATCCAACAAAAATTAGATCTAAATGCGGTCCGCCCACTATTTTAACCGAACAAGAGGAACAGGATATTATCCAGTGGATCTTATATAGAGCTGAAAGAGGGTATCCGGTGAGGAAGGAAGAATTATTAGATTCTGTACAGTCATATGTGACAAAATTAGGAAGACGTACTCCATTTACACACGGAAGACCAGGACGTCACTGGTATGAAAAATTGTGTAAGCGTCATCCCAACATAACTGTTAGAACATCTCAGAATTTAAGTATGACTCGTGCTTCTGTAACGGAAGAAAATTTAAGAGGATGGTTTGGTGAAATTAAAACCTATTTGCacagtaaaaatttaatcgatataCATCCATCACGTGTCTATAATTGCGATGAAACTAATGTAGAGCTGACACCTAAGCCGGACAGAGTTTTAACGAAAAAAGGAGCCCATACAGTATACACAGTACTAGATGCcaatgaaaaagaaagtttcACTACCTTGTTTATGTACAACGCCGAAGGCTTACGAGCTCCTCCTATGATTTTGTACTCCTATAAAGAAAATGAACCcaacaaaattttggaaaatagtCCAAGCGAATGGGGCATTGGTGTTTCTGAAAATGGATGGATGACAATAGAGActttttatgaatatataactaatattttttATCCTTGGCTGTTGAAAACAAATATCGAGTttcctattatattatatttaggtGGTCATTCCTCTCTTGTTACTATTCCATTATTTCAGTTTTGCCGTGAGAAACGAATCGAGATAATAGCATTATATCCAAATGCTACACATATTATTCAACCACTTGACATCGCAGTCTTCCACCCGTTTAAGGATATTTGGAAAGAAACATTGTCCAAGTGGGAAGTAGAAAATGTCTCAAAAGTGAGAAAAGAACAATTTCCTCTAGTGTTGCAGAAAGCTTTACAGTCATATACAGCAGAAAAAATGAATGTGCAAGGTGGGTTTAAGGCCAGTGGTTTAATGCCATTTAATCCGGAAGCTGTAGAATACAatgttttacataaaaaaaagacgaacaataaaaattataatgtacaaACAAATCAAGCAAATCAGGTACCAGAAAGTCAGCAGCATCTTGTAAATAAGGAGATTGAGAATAAGATCAGACATTTAGaaacttttgaaaaaaatttgtcacaaaaGTTATTGCAAAATTTCAAGGAGGCCGAATCTGCTGAGTGTTGGATTAACGATATAGAAAATAAGGGATTATTTAATTACTGGCTGCAAATTAAAAAAGCAGCTAGTGGTATTAGCTTTGGAACTATTTAA
- Protein Sequence
- MPPKLRGGKNNEKYETIKKMRPSVEENNVKSNVKSNIVFRKCNQQKIKKHRKNYAPESLEKAVKAVNEGISLRKAAQMHCVPVTSIFRAAKNPTKIRSKCGPPTILTEQEEQDIIQWILYRAERGYPVRKEELLDSVQSYVTKLGRRTPFTHGRPGRHWYEKLCKRHPNITVRTSQNLSMTRASVTEENLRGWFGEIKTYLHSKNLIDIHPSRVYNCDETNVELTPKPDRVLTKKGAHTVYTVLDANEKESFTTLFMYNAEGLRAPPMILYSYKENEPNKILENSPSEWGIGVSENGWMTIETFYEYITNIFYPWLLKTNIEFPIILYLGGHSSLVTIPLFQFCREKRIEIIALYPNATHIIQPLDIAVFHPFKDIWKETLSKWEVENVSKVRKEQFPLVLQKALQSYTAEKMNVQGGFKASGLMPFNPEAVEYNVLHKKKTNNKNYNVQTNQANQVPESQQHLVNKEIENKIRHLETFEKNLSQKLLQNFKEAESAECWINDIENKGLFNYWLQIKKAASGISFGTI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -