Mdil035163.1
Basic Information
- Insect
- Megalocaria dilatata
- Gene Symbol
- -
- Assembly
- GCA_034642435.1
- Location
- CM067862.1:43243715-43250197[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.00014 0.015 16.8 1.5 1 23 218 241 218 241 0.96 2 13 0.077 8.6 8.2 1.8 1 23 274 297 274 297 0.94 3 13 0.018 2.1 10.1 2.8 1 23 303 326 303 326 0.95 4 13 0.13 15 7.5 3.1 1 23 332 355 332 355 0.94 5 13 0.35 39 6.1 3.7 1 23 361 384 361 384 0.94 6 13 0.012 1.3 10.8 0.7 1 23 390 413 390 413 0.95 7 13 0.0011 0.12 14.0 2.3 1 23 419 442 419 442 0.95 8 13 1.5 1.7e+02 4.1 3.2 1 23 448 471 448 471 0.89 9 13 0.008 0.9 11.3 1.0 1 23 477 500 477 500 0.89 10 13 0.00055 0.062 14.9 2.1 2 23 507 529 506 529 0.96 11 13 0.16 18 7.1 2.6 1 23 535 558 535 558 0.94 12 13 0.035 4 9.2 1.2 1 23 564 587 564 587 0.93 13 13 0.00032 0.036 15.7 2.5 1 23 593 616 593 616 0.95
Sequence Information
- Coding Sequence
- ATGGATgatgttaatgttgaaaatGATAATTGCCAGAAGAACGAAATTGAAAATACTGGATCTTTTGGTAGTAATATCTATGAAGAAAGAAGCAAGTATTTGGTTGCATCTTACATTAGTGCCTCCCATCAAGATAATACAGGGAAAATTGGAAGTGTCGAAGTGAATAATGAAAATGTGAACAACGCTGAACAATTTATTGACAACGTAGGAGGCCATGACAGGACAGAATACTCCGCTCTAAACGAACATAATTATGCCGATTATTCCTCCCAACAAATCGATAACCAGAATTTTCTTTTTATCAAACTGGAAGAAAAACACGATCAAGAGATtaacattttcgacgacggttTAGCCGTTGAAGAAACAACGGGACATCTCAGAGTATTTCCTGGTAAATTTGAAGTTGAGGCTCATAACAGGGACGAATTCTTCGTTAAAAGTGAACATAATTACGCCACCGATCCTTCACATCGAGTTCACCACGAGACTTTTCGTTCCGTCAAATTGGAAGAAAACTACGATCGAAAAATCGATATTTTTGGGCATGGTTTAGCCGTCGAAGAAGCGACAGAACAGCACGGAGCGTTTCCTTCGAACGAGGATCCCGGTGAATCTCATTTAAGTTTAAAATTCAGTTCGAAACTACATaagtgtaacttatgtgattatgctgtgAAACGAAAATATCTTCTTAAGCaacatatagattcagttcactCGGATTCGATGCCATATAATTCGTGTGATTTTGCCGCAGATGGAAAAGACCGtttgaaaaatcatgtggatTTCTTACATCTGAATtttaagcaacataaatgtaatttttgCGATTACGCCACAAAGGAAAAAAGACAAATACAGAATCATGTAGATTCGGTCCATTTGAATCTCAAGCAACACAAATGTAGCTTATGTGATTATGCGGCCAATCAAAAATATTGTCTGATGAAACATGTAGAGTcggttcatttagatttgaagagacataaatgtcacttgtgcgaTTTTGCCACTCAAGAAAAGAGAAGTCTCCGAAATCACgtagattcggttcatttgaatctaaagcaacacaaatgtcacttgtgcaaATTTGCCAGCAACGGAAAGAGAAAACTCGAAAAACACGTAGATTCGGTCCATTTAGGTTTGAAAAAATACGAGTGTCACTTGTGCGATTACGCCAGCAATGAAAAGAGAAGTCTGAGCAATCACGTGGATTCGGTCCATCTGAATTTGAAGCAGCACAAGTGCGGCTACTGCGATTACGCCACGAATCAGAAACCGCATCTCAAGAATCACGTAGATTCGGTCCATTTCAACGTGAAGAAACATAAGTGCAACTTGTGCGACTACGCCACGAACATAACGTGTCACCTGAAGGATCACGTTGATGCggtccatttgaatttgaaacggTACGAATGTCACATGTGCGATTACGTCGGAAGTCGCAAGTTCAACCTGAAGTTTCACATAGACGCCGTTCACCTGAATCTGAAACAGAATAAGTGTCATTTATGCGACTTTGCGACAAACCGCAAGTCCACCCTCAAGAACCACATAGATTCCGCCCATTTAAACCTGAAAAAACACAAGTGTCACTTGTGCGATTACGTGAGTAACGTAAAACGAAGCATCAAGAATCACGTAGATTCGGTCCATTTAAAGTTGAAAGAACACAAATGCGACTTTTGCGATTTTGCCATGAACGGCAAAGGTAATCTCAAGAATCACATGGACGCCTTTCATTCGGACGTGAAGCCGCACAAATGTCATCTGTGCGAATATTCGACCAATCAGAAGGGTAACCTCAAGGCGCACGTGGAATCggtccatttgaatttgaagagaCATAAGTGCGACTTGTGTGATTTTGCCGCAAAGTGTAAACGTGTCCTTAAGAGACATAACGATTCGATTCATTTAAAGTTGAGACGGCGTAAATGTAAGAAAACTTGA
- Protein Sequence
- MDDVNVENDNCQKNEIENTGSFGSNIYEERSKYLVASYISASHQDNTGKIGSVEVNNENVNNAEQFIDNVGGHDRTEYSALNEHNYADYSSQQIDNQNFLFIKLEEKHDQEINIFDDGLAVEETTGHLRVFPGKFEVEAHNRDEFFVKSEHNYATDPSHRVHHETFRSVKLEENYDRKIDIFGHGLAVEEATEQHGAFPSNEDPGESHLSLKFSSKLHKCNLCDYAVKRKYLLKQHIDSVHSDSMPYNSCDFAADGKDRLKNHVDFLHLNFKQHKCNFCDYATKEKRQIQNHVDSVHLNLKQHKCSLCDYAANQKYCLMKHVESVHLDLKRHKCHLCDFATQEKRSLRNHVDSVHLNLKQHKCHLCKFASNGKRKLEKHVDSVHLGLKKYECHLCDYASNEKRSLSNHVDSVHLNLKQHKCGYCDYATNQKPHLKNHVDSVHFNVKKHKCNLCDYATNITCHLKDHVDAVHLNLKRYECHMCDYVGSRKFNLKFHIDAVHLNLKQNKCHLCDFATNRKSTLKNHIDSAHLNLKKHKCHLCDYVSNVKRSIKNHVDSVHLKLKEHKCDFCDFAMNGKGNLKNHMDAFHSDVKPHKCHLCEYSTNQKGNLKAHVESVHLNLKRHKCDLCDFAAKCKRVLKRHNDSIHLKLRRRKCKKT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -