Basic Information

Insect: Megalocaria dilatata
Gene Symbol: RTase
Assembly: GCA_034642435.1
Location: CM067859.1:40965600-40971231[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 23 0.0002 0.023 16.3 1.0 1 23 304 327 304 327 0.97

2 23 0.0026 0.29 12.8 1.0 2 23 368 389 368 389 0.98

3 23 0.00064 0.071 14.7 0.5 1 23 432 454 432 454 0.98

4 23 5.8 6.5e+02 2.3 1.2 1 21 460 480 460 483 0.70

5 23 0.014 1.5 10.5 2.8 1 23 495 517 495 517 0.97

6 23 0.0034 0.38 12.4 1.8 1 23 560 582 560 582 0.98

7 23 4.2 4.7e+02 2.7 2.4 1 23 588 611 588 611 0.85

8 23 0.0049 0.55 11.9 0.5 1 23 628 650 628 650 0.98

9 23 0.6 68 5.4 2.3 1 23 656 678 656 678 0.96

10 23 0.033 3.8 9.3 0.3 1 23 696 719 696 719 0.96

11 23 0.00063 0.071 14.7 2.3 1 23 725 748 725 748 0.98

12 23 0.16 18 7.2 0.9 1 23 758 781 758 781 0.95

13 23 3.3 3.7e+02 3.1 2.7 1 23 798 820 798 820 0.97

14 23 0.13 14 7.5 2.3 2 23 827 848 826 848 0.97

15 23 0.21 23 6.8 1.5 1 23 871 894 871 894 0.95

16 23 0.00044 0.049 15.3 5.1 1 23 900 923 900 923 0.98

17 23 0.0012 0.13 13.9 3.5 1 23 934 957 934 957 0.98

18 23 0.37 42 6.0 5.1 1 23 971 993 971 993 0.98

19 23 0.03 3.4 9.5 0.7 1 23 999 1021 999 1021 0.98

20 23 2 2.3e+02 3.7 1.5 2 23 1029 1051 1028 1051 0.92

21 23 2.1 2.4e+02 3.6 2.6 1 21 1057 1079 1057 1083 0.91

22 23 0.00011 0.012 17.1 0.3 1 23 1110 1133 1110 1133 0.94

23 23 0.25 28 6.6 3.6 2 23 1139 1161 1138 1161 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	23	0.0002	0.023	16.3	1.0	1	23	304	327	304	327	0.97
2	23	0.0026	0.29	12.8	1.0	2	23	368	389	368	389	0.98
3	23	0.00064	0.071	14.7	0.5	1	23	432	454	432	454	0.98
4	23	5.8	6.5e+02	2.3	1.2	1	21	460	480	460	483	0.70
5	23	0.014	1.5	10.5	2.8	1	23	495	517	495	517	0.97
6	23	0.0034	0.38	12.4	1.8	1	23	560	582	560	582	0.98
7	23	4.2	4.7e+02	2.7	2.4	1	23	588	611	588	611	0.85
8	23	0.0049	0.55	11.9	0.5	1	23	628	650	628	650	0.98
9	23	0.6	68	5.4	2.3	1	23	656	678	656	678	0.96
10	23	0.033	3.8	9.3	0.3	1	23	696	719	696	719	0.96
11	23	0.00063	0.071	14.7	2.3	1	23	725	748	725	748	0.98
12	23	0.16	18	7.2	0.9	1	23	758	781	758	781	0.95
13	23	3.3	3.7e+02	3.1	2.7	1	23	798	820	798	820	0.97
14	23	0.13	14	7.5	2.3	2	23	827	848	826	848	0.97
15	23	0.21	23	6.8	1.5	1	23	871	894	871	894	0.95
16	23	0.00044	0.049	15.3	5.1	1	23	900	923	900	923	0.98
17	23	0.0012	0.13	13.9	3.5	1	23	934	957	934	957	0.98
18	23	0.37	42	6.0	5.1	1	23	971	993	971	993	0.98
19	23	0.03	3.4	9.5	0.7	1	23	999	1021	999	1021	0.98
20	23	2	2.3e+02	3.7	1.5	2	23	1029	1051	1028	1051	0.92
21	23	2.1	2.4e+02	3.6	2.6	1	21	1057	1079	1057	1083	0.91
22	23	0.00011	0.012	17.1	0.3	1	23	1110	1133	1110	1133	0.94
23	23	0.25	28	6.6	3.6	2	23	1139	1161	1138	1161	0.94

Sequence Information

Coding Sequence: ATGATTGAACATCTAAATAAGTTTGAAGTGCTTCCGGAGTTTCAATCGGGGTTTCGTAGAGGTTACAGTTGTACGACTGCTCTTCTCAAAATAAGTGatgacattttattgaattccgATAGGGGTCTTGTAACAGCGTTGATCTTATTAGATTATacaaaagcatttgatacgATCTCACATGATTTGCTGATTGCTGTGCTTTCTTTCGTGGGATTGTCCGAAGATTCAGTTTCATTGCTTACGAGCTATCTTTCTAATAGAACCCAGCGTGTGAAAGTCAATGGTTCACTATCGGGTCCTCTGCTTATATCTGTAGGTGTACCACAGGGATCATTGCTGGGTCCCCTGCTCTTCGTAATTTATACccatatgttttggaaatacctTAAATTCTGTAACGCCCATTTTTATGCTGATGATGCCCAGCTTTACCTCAGTTTTGTTGCTGGTGATGTTGATGAAGGtgttcgaaaaataaattatgatctCGCGACCATCCAAGAGATATCTGAGCAGCACAATCTTTTGGTTAATCCTGGTAATGAGATTCCCATCGTGAAGAGCGTTCTTAACCTTGGTCTGATAATGGACAATTCTTTTCGTTATAGGTTGCATATTGTGGGTTGTATTAGGCGTTCTCTCTACGCCTTGAGGCTAATTTATCCTCACCGTAATGTTCTGCCTGTTGAGGTCAAGAAAGCTGTCTGCGATTCCCTGGTGCTGTCCAATTTTAATTACTGCTCTCAGGTATTTTTCTCCTGCTTGGATCAGGCTACTTTAAACTCAGtacaaaggatacaaaattcttgcttaagtttcaccATACCAGAGGCAGATACACATTTTATGAATCAACCTGGAACATCGGACATCAGTGATTTCGCATTTAAACGTGAGGCCGAGCTATACCCTTGCAATTATTGCGATTATGTAGGATCTCACCCAAAGTTATTGACTTCGCATATGAATAATCGCCATATTAAATCTGTGGTGTATCATTGCCCTCATTGCCAATATAATTCTACTGTTGCTCGTAATACGAGAGATCATATACAGTGTAAACATTCTAATGAAGATGATAAGCCGATTATTAAGAGGAAATGTGAGTTTTGTGATTACTCTGCTAGCAGTACAACGGCTCTTAAGAATCACATGAATAAACACACAAAGGAGGTGAAACATCAATGTTCCTTTTGTGAATTCAATACTTTGTGGGAGGGATATCTGAAAATGCATATAAGGCGCAAACACAGTGATCAAAATCTCGAATCTGGAAATACAGCGAAAGAATATCCTTGCCAATATTGTGACTACAAAGCTGCAACTCCAAGCACACTCAAACTGCATACCAATAAGCATACAAGAGAACAGGAACATCAATGTCCTTACTGTCCTTACAAGACAGTTTGGACAACCTACATAAAACTgcatatacaaaataaacatttcaaaaaggaTAAATCTCCCTCTGCCAAAGAGCATCCTTGTAGTTTTTGCGATTACAAAGCCAAAAATTCTACCTTACTGAGGCAACATCTTAACAAGCATACCCGTGAAAAGATACATCAGTGTCCTCATTGTCCATTTAATACCTTATGGGTAACTTACATGAAACTACACATTAAACGGAAACATAGTGAAAACAATGAAAACgaagtttcagagaaaaaagATTTTCAATGTCAATATTGCCCTTATAAAGCTATAAGCTTAAGTCACCTGAAAATACACGAGAATAAACACACTAAGGCGATCGAATATAAATGTAATATATGTGATTTTAAGACCACATGGTATGGTTActtgaaatttcatattaagAGAAAACACTCGTTGAAGTCTGACGTGAAAGATGAAGACGAGAAGGAAAAAACAACGTTTCCATGCAGCTTTTGCCCGTATAAAGCTATAAATTTGAGCACGTTGAAGGTTCATCAGAATAAACACACCAGAGAAAATATTTACAATTGTCCACATTGTGACTTCAAGACGACATGGAGAGCTTACATCAAAAGTCACATTCAGAAACATAATGCCAATAATTTCAAAACCAGGAAACAGGGAGATGGGTCTGTCAAATCTTTTCCATGCCAGTATTGCAGTTATGTGGCTACTCAGATGGGATCCTTGAAGCTGCATGTTAATTCCAAACATACCAGGGAAAACATGCACAAGTGTCCGGAATGCGATTATGAATGTGCAGTGTATGGAAATTTGAGGATGCATATTAGACGTAAACATGGTTTGAAACCTGACGACGCTGGAAAATATCATTGTAAGGAATGCGAGTTTGTATCGGAGAGTGCTTCTGAAATTAGAACTCATTTGAATGAAAAGCATGACTTGAAGATTGAAattgatgatattaaaaaagaagATGAGAAGGTATACTCATGTCAATATTGTTCATATACAACACTATATCAGCAGGTAATGAAGAAACACATTAACAAACATACAAGACAGAATGTTATTAAATGTCCTCACTGCCCTTATTCAACAGTTTGGAATCACTATATGAAAGTCCACATTAAAAGACACAATGAACCGAAAACTTCAACTGGTAGGCAAAGAAGTACCAAACCAAACACTGATCAAAGTAGGTTATTCCCTTGTCAGTATTGTGACCATAGAAGCCTCTCCTTTAGTAGTCTAAGAGATCATATTAATTCTGTGCACACTCGTGAGGTTATTTATAAATGTCCGTACTGCGACCATAGATGCACATTGAAAGGAAACCTGAAAGGTCACATCCGAAGAAAGCATCCCGCTGAATTCACTGAGCAAGAAAAGCGATATCAATGTGAACATTGTGACTTCAAAACATCCGAaagaagaaatttaaaaatCCATTTGAAGAAGGAACATAATATAGATGATGCCAAAATTAAAGCAGAAAATGGAGAATACAAGTGTCAGTTTTGTGAATACAAAGCGAGAAgtctttatactctgaaaatacACCGGCATAAACATACTAAGGAGAATGCTTATCGTTGTCCCCAATGTGAATTCGCTACTAAATGGCCAAACTATCTCAGAAAGCACATAAAACAACATAGTATTGGAAAAAGTAGGGTTTCTTGTTTATATTGCGATTACAAAGGCTGCTCCACATTCAGATTGAGAAAACACATAGAAGGCCTTCATAAGGAAGGTGACTTTTATCCTTGCCCCAAATCAAATTGTCATTTCAAAACTATTCACTATACAAGTTTGAGAATGCACTTAAAGGGTAGTATTCATTCCTCAAATGTACCTAGATCTCACATGTCTGTGAGTCGTaatttttcatacaaatataaacCTAATGAAGGAAGATACTTTGCATGCGATTATTGTGATTATGCATCGAAAACTCAGGGAAACTTGGAAAAACACATAGAAAATAAACACGAGAAAAAAGCCATGAAGTGTGGTTTGTGCAGCTATAGAACCCCCTCGAAGCATTACCTTAATAGGCACTTCAAATTAAAACATTCAGTCCAGAAGAAGGAAGATGAAGAAAGCACAAAAACAGAACTGGAAGAAACTGCGACTTATCCTAATGTTTCATATGAAATATCCGATAAAATTGATGATATCGACAATCCCGACATCTCTAAAATGGATACCTACCATTCGGATAATagagatgaaatatttttatctccAGATTATACAGAGTCTACTGCCAATACGAGCAATGAATGTGATGATGTCTCAGGTCTATTGAATCGTTCTAAAAGGAAAAGGAGTTTCATTCCATATTATGTGGAAGAAAGTGACGATGaggataatgaaataatttgtgAAGATTTCCTTGAATTAGAGCTAGGCGCTAATATTGGAACTGATGATAAGCACAGTAACATTGAAATGGAAcaaagagaagaagaagaagaaataattgttACTCCATCAATAATGGATACCATAAAATTACTTCCTATTCGGAATTTACGTTCAGCTAGTGATGATAAAAAAGGAGATAAACATCATGAAGTTTCTaacattaaaacaaaaattcaaaatggtcCTGAAAATGTAGAGAAAAATTGTGGTTCCAGTGATATTCTATCGGAGATAAGTGGAGAAAATGCATCAAATGAAGAGCTAAAACTTAAGAATACAGATTCTAATCAATCTCAAATACTCTGTCAAATGAATGGTGTGGTAGcaggaaataaaaaaactaatccCAAAATTGTAAATACAAGATTTACTAGAAAAAGGGGAAGAATGACTAGAATAAGAAAAATAGTAACTGACAAAATCatttttccaaaaagaaaaggGCGTCCAGTAATGAAGGTATTGAAACAAAGTGCCCCAATTAACAAGTGCATTAATAATGCTATCCTTGATAATAAACAAGAACCTGATGATTCCCCTATGGAAGACTTGGCAGTATCCAATAATGTTTTACCTAATGAAAACAGAGTAGGTGACTCATTTAGCTCTTGCAGTACTAGTGTTTCAAACATTAAATTGGATGCCACTGAATCACTAGTGGATAATTCAAAAAGCGATACTCCTATTGACACAGTGGTACTATCCCAATCAATTAATACAGAGCAAGTAAATCAAGTAGACAATGGAAATCATAATATACCACCAAGTGCTCCTGAGTTGAAAAATTCCGTAGAAAACAAGACAGTTATATCGGTAGAAGAGAATAAAGTTATATCGAAAGAAAACAAGGAAGTTACATCAGTAGAAAGCAAGGAAGTTATATCGGTAGAAAACACAAACGAAATAATTAATACTGATAAGAAACAAGAAAAGGAGACATAA
Protein Sequence: MIEHLNKFEVLPEFQSGFRRGYSCTTALLKISDDILLNSDRGLVTALILLDYTKAFDTISHDLLIAVLSFVGLSEDSVSLLTSYLSNRTQRVKVNGSLSGPLLISVGVPQGSLLGPLLFVIYTHMFWKYLKFCNAHFYADDAQLYLSFVAGDVDEGVRKINYDLATIQEISEQHNLLVNPGNEIPIVKSVLNLGLIMDNSFRYRLHIVGCIRRSLYALRLIYPHRNVLPVEVKKAVCDSLVLSNFNYCSQVFFSCLDQATLNSVQRIQNSCLSFTIPEADTHFMNQPGTSDISDFAFKREAELYPCNYCDYVGSHPKLLTSHMNNRHIKSVVYHCPHCQYNSTVARNTRDHIQCKHSNEDDKPIIKRKCEFCDYSASSTTALKNHMNKHTKEVKHQCSFCEFNTLWEGYLKMHIRRKHSDQNLESGNTAKEYPCQYCDYKAATPSTLKLHTNKHTREQEHQCPYCPYKTVWTTYIKLHIQNKHFKKDKSPSAKEHPCSFCDYKAKNSTLLRQHLNKHTREKIHQCPHCPFNTLWVTYMKLHIKRKHSENNENEVSEKKDFQCQYCPYKAISLSHLKIHENKHTKAIEYKCNICDFKTTWYGYLKFHIKRKHSLKSDVKDEDEKEKTTFPCSFCPYKAINLSTLKVHQNKHTRENIYNCPHCDFKTTWRAYIKSHIQKHNANNFKTRKQGDGSVKSFPCQYCSYVATQMGSLKLHVNSKHTRENMHKCPECDYECAVYGNLRMHIRRKHGLKPDDAGKYHCKECEFVSESASEIRTHLNEKHDLKIEIDDIKKEDEKVYSCQYCSYTTLYQQVMKKHINKHTRQNVIKCPHCPYSTVWNHYMKVHIKRHNEPKTSTGRQRSTKPNTDQSRLFPCQYCDHRSLSFSSLRDHINSVHTREVIYKCPYCDHRCTLKGNLKGHIRRKHPAEFTEQEKRYQCEHCDFKTSERRNLKIHLKKEHNIDDAKIKAENGEYKCQFCEYKARSLYTLKIHRHKHTKENAYRCPQCEFATKWPNYLRKHIKQHSIGKSRVSCLYCDYKGCSTFRLRKHIEGLHKEGDFYPCPKSNCHFKTIHYTSLRMHLKGSIHSSNVPRSHMSVSRNFSYKYKPNEGRYFACDYCDYASKTQGNLEKHIENKHEKKAMKCGLCSYRTPSKHYLNRHFKLKHSVQKKEDEESTKTELEETATYPNVSYEISDKIDDIDNPDISKMDTYHSDNRDEIFLSPDYTESTANTSNECDDVSGLLNRSKRKRSFIPYYVEESDDEDNEIICEDFLELELGANIGTDDKHSNIEMEQREEEEEIIVTPSIMDTIKLLPIRNLRSASDDKKGDKHHEVSNIKTKIQNGPENVEKNCGSSDILSEISGENASNEELKLKNTDSNQSQILCQMNGVVAGNKKTNPKIVNTRFTRKRGRMTRIRKIVTDKIIFPKRKGRPVMKVLKQSAPINKCINNAILDNKQEPDDSPMEDLAVSNNVLPNENRVGDSFSSCSTSVSNIKLDATESLVDNSKSDTPIDTVVLSQSINTEQVNQVDNGNHNIPPSAPELKNSVENKTVISVEENKVISKENKEVTSVESKEVISVENTNEIINTDKKQEKET

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -