Basic Information

Insect: Megalocaria dilatata
Gene Symbol: -
Assembly: GCA_034642435.1
Location: CM067857.1:49117099-49119099[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 8.9e-05 0.01 17.4 0.8 2 23 193 214 192 214 0.96

2 11 2.2e-07 2.4e-05 25.6 2.8 1 23 220 242 220 242 0.99

3 11 3.7e-06 0.00041 21.8 0.2 1 23 248 270 248 270 0.96

4 11 0.00024 0.027 16.1 0.2 3 23 278 298 276 298 0.96

5 11 1.1e-05 0.0012 20.3 1.9 1 23 304 326 304 326 0.98

6 11 5.1e-07 5.7e-05 24.5 0.6 1 23 332 354 332 354 0.99

7 11 2.8e-05 0.0031 19.0 2.2 1 23 360 382 360 382 0.99

8 11 4.3e-06 0.00048 21.6 0.3 1 23 388 410 388 410 0.99

9 11 3.4e-06 0.00038 21.9 1.4 1 23 416 438 416 438 0.99

10 11 6.9e-06 0.00078 20.9 0.6 1 23 444 466 444 466 0.97

11 11 1.8e-05 0.0021 19.6 0.2 1 23 472 494 472 494 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	8.9e-05	0.01	17.4	0.8	2	23	193	214	192	214	0.96
2	11	2.2e-07	2.4e-05	25.6	2.8	1	23	220	242	220	242	0.99
3	11	3.7e-06	0.00041	21.8	0.2	1	23	248	270	248	270	0.96
4	11	0.00024	0.027	16.1	0.2	3	23	278	298	276	298	0.96
5	11	1.1e-05	0.0012	20.3	1.9	1	23	304	326	304	326	0.98
6	11	5.1e-07	5.7e-05	24.5	0.6	1	23	332	354	332	354	0.99
7	11	2.8e-05	0.0031	19.0	2.2	1	23	360	382	360	382	0.99
8	11	4.3e-06	0.00048	21.6	0.3	1	23	388	410	388	410	0.99
9	11	3.4e-06	0.00038	21.9	1.4	1	23	416	438	416	438	0.99
10	11	6.9e-06	0.00078	20.9	0.6	1	23	444	466	444	466	0.97
11	11	1.8e-05	0.0021	19.6	0.2	1	23	472	494	472	494	0.96

Sequence Information

Coding Sequence: ATGAACCAAGGAATAAgaatcataaatgaaataaataaattatgtagAACTTGCCTTAATGAGAAAAACGACGAAGAATTACGCAGTCTATTCGAAAATTCTATTGATTCTTTGCTATATGATTTGACTTGCATTACAataaaTCAAAATGATGGATTTCCTACTTATATATGCAATAGTTGcttattatcattaaatattGCAATCGATTTCAAACAACAATGTAGGAAAGCTAACGAAGATTTACATTCTtcgtttttttcaaataatactgTTATTACTGAGCTAAAATCTATAGATGTAATAGAAGAACCTGAAAATCTTGTGAACAATGAATATTCAACAGTAATCAGTCGTACAAAAGAAGGTGAAACAACAAAACTGAATTTGGATATGCATCTACATGAATCAGACAGGGAAGGAATTgaggaagaaaatttttttccggaAGTACCTGAAGCTCCTGAAGAAAATGATCTCGAGACAGAAATGTTAGCTTCACCTTGCGagaagaaatttaaatgtagaaGTGAAGATGCTTTGAAAAACCATTTAGGGAGATATGGAAGAAAAATTGAATGTGAGATGTgcaataaaacattttcaaCATTAATGTTATTCAGAACTCATGTAAAAGAACATTCAGATTACAAACCCTATACATGTGAACtttgccaaaaaaaattttctcagtcAAAAAATTTATCTAAGCACATGAAAATTCATAGTGGGGACAAGAAATATTTATGTACAGTTTGTGGAAAAAGATTTTTTGAGCTAGGTAATTTGGAGattcatATGAGAATTCATTCAGGAGAAAAACCAATAATTTGCCCAACATGTGGAAAAACATTTTTAGATCCTCATGGTTTAAAGTCGCATGCCAAAATACATacaggagaaaaaaaatttgagtgcGATATTTGTGgaaaaaaatttgctCATTCTTTTGTACTTACAACTCATAAACGCATTCATACTGGTGAAAGACTTTATAAATGCAAAACATGTGGAGCATCTTATGCTACATCATCTTACTTAACCATTCATCAGAGAATTCATAACCAAGAAAGACCTTATAAGTGTGAGACCTGTTCAAAGaaCTTCATAAGTAGGTGTTCCTTAGTTGCCCATCTAAGAATTCATTCTGGAGAGAAGAAATTCCAGTGTACTATTTGTGGAAAGAGGATGGGACGATCTGCAGACCTCCAGATTCATATGAGGTCTCACACAGGGGAGAAGCCATACTCTTGCAACTTGTGCTTCAAAAAATATCCCACATCAAGTAATTTAGCCGCACACAAGAGAACACACTTAGGCATTAAAGATCATGTTTGTTCCACGTGCGGGAAGGCTTTTGGAGATCCTAGAACTCTGAAAGCCCATTTTAGAATACACACTGGTGAAAAACCATATCTTTGCACAGTTTGTGGTGTAAGATATACTCAACCTGGTCAATTGTCAGCTCACAGAAAAACCCATCTGATAGACAGAAActga
Protein Sequence: MNQGIRIINEINKLCRTCLNEKNDEELRSLFENSIDSLLYDLTCITINQNDGFPTYICNSCLLSLNIAIDFKQQCRKANEDLHSSFFSNNTVITELKSIDVIEEPENLVNNEYSTVISRTKEGETTKLNLDMHLHESDREGIEEENFFPEVPEAPEENDLETEMLASPCEKKFKCRSEDALKNHLGRYGRKIECEMCNKTFSTLMLFRTHVKEHSDYKPYTCELCQKKFSQSKNLSKHMKIHSGDKKYLCTVCGKRFFELGNLEIHMRIHSGEKPIICPTCGKTFLDPHGLKSHAKIHTGEKKFECDICGKKFAHSFVLTTHKRIHTGERLYKCKTCGASYATSSYLTIHQRIHNQERPYKCETCSKNFISRCSLVAHLRIHSGEKKFQCTICGKRMGRSADLQIHMRSHTGEKPYSCNLCFKKYPTSSNLAAHKRTHLGIKDHVCSTCGKAFGDPRTLKAHFRIHTGEKPYLCTVCGVRYTQPGQLSAHRKTHLIDRN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -