Mrot006117.1
Basic Information
- Insect
- Megachile rotundata
- Gene Symbol
- -
- Assembly
- GCA_000220905.1
- Location
- NW:90732-99969[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 8.4 5.2e+02 0.6 0.1 2 9 602 609 601 610 0.82 2 10 0.023 1.4 8.7 0.5 1 23 629 652 629 652 0.98 3 10 4.4e-05 0.0027 17.3 0.4 1 23 658 680 658 680 0.98 4 10 0.0076 0.47 10.2 3.2 1 23 686 708 686 708 0.98 5 10 1.1e-05 0.00068 19.1 0.3 3 23 716 736 714 736 0.97 6 10 0.024 1.5 8.7 1.7 3 23 743 764 741 764 0.95 7 10 3.5e-05 0.0021 17.6 2.0 1 23 768 790 768 790 0.98 8 10 0.012 0.73 9.6 0.6 1 23 795 817 795 817 0.98 9 10 2.5e-07 1.5e-05 24.4 0.3 1 23 823 845 823 845 0.98 10 10 9.4e-05 0.0058 16.2 1.6 1 21 850 870 850 871 0.94
Sequence Information
- Coding Sequence
- ATGGAGTTAGGGGAGGGAGAGGCGAAGATTTGTCGTCTTTGCGGCCAGTGCGAAAGTATATATATTGATGTGTTCGGTGAAGAAGGCACCAAACGATTTTTGGGATTGAAGATTTATACGAAAATCAACATTTTGATAGATGAGAGGGATCCTCTGCCCAAGGCGATCTGTGTTCAGTGTCTGGGCAAGCTCGAATTCGTTTGTGACTTCCAAGAGGAGTGTCTTCGCACCCAACAAGTGTTACGCGATCGATACAATCTACCACCCTTATCAGAAATTATAAAAAAGAACGATGGATTGCCTCAAATTGTGTGCATGCGATGTCTGGGCACGTTGGAATTCTTGTGCGACTTCTACGACAGCTGCCATCATGCTCAAAAGGAACTCTCTGAGGTAGTTCAAAAGGAAACTGAAGATGAACTCCAACGAGAAAATGACGCTGAATCGGACAAAGAAAATGCTACACCAACAATTGACACGAAACGCAAAGCCTTATCGCCAgtcattaataattgtataaccaAAAGTAACGCGCCGTATAGCAATATCGAGAAAACGAATAACGATCAGACTAATACGAATACATTAGAAAATATAGTGAACACTCAATCCACATTGGATAATATTCCTACACGAGAAAAGTGTTCAATGAACAGACAGAGTAATGGTACGAAACTTAAACGCAAAACAAATTTCACAAGAAAGGACGCTATTATGAAGAAGACAAGttcaagaaatttattgaGAGAAGATGAAACAAATGTTAACGAAAACTCGGTGTTTCCTGTACGACGTAAGAGAGGTAGAAAgagtaaattggaaaaaatgaGGGAGGCTGCGTTGTTACAGAAAGAGCTGCAGAATGTCATTGATAAAAGGAACAATGATTCTAATAACAAGAGCAAAAGATATTGTTTACGTAATATTTATGACAATACTAATTTCAATGATGCAATTAAAAGCACTATAGTTCTACCTAAACAAGTGGATGAAATCACAGCGAAGGAACAGGTAGAAATGGACTCGTCATCAAATGAAACTCATACAAAGGATAATACTACTAATAGTAATAAATCAACAAAAACAAAACCTGAtgatgaaaacttgaaaaatgttgaagaCTGTtcaaggaaaattgaaaacaatttggtaaaaaataaagcaatatcTGTTATTGTGAAGCaggagaaattggaatctgAAGGCACACTTAAACAGACTGAGAAATTGAGTCACTTAACTTGGATTCCTAATGAGATTTTGGTGCAAGAAAACATAAATTTGACGGATAACGAGAATGAGAATCAAACGGATCAACAATTAAGTTCTTCACTAAGAGCAGAAATCACTAATACCGAAACAAGTAAAAGTACTGCGACTACAGAATCCAATGTTACTGATTGCTCCAACCTACCTAATGATCAAAGTAATTTGAAACCAAGAGCATTCACGGCACAAAATCGTATAAGTGTTATAAAGTCGTCAAACGAGACAGCCACTGCAACGATTGAGAAAGATCCTTTAGAACTGTGCATTAAAGCAGATAcattaaatcaaaatgtagAGGGAGATTTAAAGTCTAGTCTAACTGAACAATTGTTGCTGCAACAAAACAATCAAAGTAACAGTTCTGACGACAGCAAGGAGCAGAGGAAGAGCAAAGACAAGTTGTTCTTTAAAATCTCTGAATTGATTAGTGATGAAGAAAAACAAGCCATTGAAACATATTATACGGTCGACATGTCGATTGTCGATCATGAAGAGGTACAGAAGAATTTAACGATAGtcgataaaaagaatatacgTTGCAATATTTGTGGACTCTTTTACCTCAGAATAGATAAGTGTCAAGTACACGTTTGGGGCCATTTGCAAATGAAACCTTACCAATGCAAAGCGTGTGATTTTTCTACTGTAACTGTTACCAATATTCGTGGGCATATTAGAAAAagtcatttaaaattgaagccATTTCCGTGCCATATCTGTGAGAAACGGTATGCCACTGCGTTTCTTCTAGATGAACATATGAATGTTCATACAGGTGACCGTccatataaatgtaaattatgtgATTTTTCGACTTCAAGAAGACAGATGCTAAGTTATCACAATTCGACTCATAAAGTATTAAAGGACGTCAATTGTAAGGTTTGTGGAAAAGAGTTTTATTCAAGAGGCAGATTACGAGCACACATGATCATGCACAACAAGGATAAAGTTATATGTAAATTGTGTTCTGCTTGCTTATCCAATCAAGAAGCTTTAGAGACACATCATAAAAATGTGCATATGCAAGATTATATATGCAGTATTTGTGGTAAACGCCTTAAATCAAAGAAAGCTTTGCATAACCATAGAAATGTACATGCTGTTGGAAAGTACAAATGTTCCTTGTGTCCGAATGTGTACAAAAGTagtcaaatattaaaagaacatCTTTTAAAACACAAAGGTATTAGGAATTATAAGTGCAACGTCTGTGAAAAAGCATTTGGACAACAGTCTCATTTAGCTGCTCACATGGCAGTACATAGTAAAATTAGatttcattGCCCTGGATGTGACAGACCTTTCAATCGGCATGACAACATGAAAATACACACTAAACGATGCAAAGTGTTTCTGGCGAATCCAgaacttaaaaacttttttataaaaagagaaagatgTTCGTCGTTTACTAAAGTCACAGAGTTAGAAGATGATCTGAGAAGCGATGATATATCAACACCTACTTCGCCTACATTTGTTGAGAGTCAAAATAGTGAATTATCAACTGAAACTATAGATAATCAAAATAAGGGTGCAGTAAATTTCTGCAAATTAGGACTGAACATCTCTTGTATCGAGCCAGTAAATAAAACTTGGGATCAcgatttatatgaaaaaacaGAAGTTACAAGGTCCActgaaattaatgtaattcaaaTTACACAAGTTAATGATAAATTCATTCCAGAAAGTGAAAATCTGACAGTTCTTGAAAACGTTTTGAGACCAGAAAGTTTTTGA
- Protein Sequence
- MELGEGEAKICRLCGQCESIYIDVFGEEGTKRFLGLKIYTKINILIDERDPLPKAICVQCLGKLEFVCDFQEECLRTQQVLRDRYNLPPLSEIIKKNDGLPQIVCMRCLGTLEFLCDFYDSCHHAQKELSEVVQKETEDELQRENDAESDKENATPTIDTKRKALSPVINNCITKSNAPYSNIEKTNNDQTNTNTLENIVNTQSTLDNIPTREKCSMNRQSNGTKLKRKTNFTRKDAIMKKTSSRNLLREDETNVNENSVFPVRRKRGRKSKLEKMREAALLQKELQNVIDKRNNDSNNKSKRYCLRNIYDNTNFNDAIKSTIVLPKQVDEITAKEQVEMDSSSNETHTKDNTTNSNKSTKTKPDDENLKNVEDCSRKIENNLVKNKAISVIVKQEKLESEGTLKQTEKLSHLTWIPNEILVQENINLTDNENENQTDQQLSSSLRAEITNTETSKSTATTESNVTDCSNLPNDQSNLKPRAFTAQNRISVIKSSNETATATIEKDPLELCIKADTLNQNVEGDLKSSLTEQLLLQQNNQSNSSDDSKEQRKSKDKLFFKISELISDEEKQAIETYYTVDMSIVDHEEVQKNLTIVDKKNIRCNICGLFYLRIDKCQVHVWGHLQMKPYQCKACDFSTVTVTNIRGHIRKSHLKLKPFPCHICEKRYATAFLLDEHMNVHTGDRPYKCKLCDFSTSRRQMLSYHNSTHKVLKDVNCKVCGKEFYSRGRLRAHMIMHNKDKVICKLCSACLSNQEALETHHKNVHMQDYICSICGKRLKSKKALHNHRNVHAVGKYKCSLCPNVYKSSQILKEHLLKHKGIRNYKCNVCEKAFGQQSHLAAHMAVHSKIRFHCPGCDRPFNRHDNMKIHTKRCKVFLANPELKNFFIKRERCSSFTKVTELEDDLRSDDISTPTSPTFVESQNSELSTETIDNQNKGAVNFCKLGLNISCIEPVNKTWDHDLYEKTEVTRSTEINVIQITQVNDKFIPESENLTVLENVLRPESF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00963403;
- 90% Identity
- iTF_00963403;
- 80% Identity
- -