Mrot000118.1
Basic Information
- Insect
- Megachile rotundata
- Gene Symbol
- -
- Assembly
- GCA_000220905.1
- Location
- NW:608788-611515[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.00094 0.058 13.1 5.8 1 23 248 270 248 270 0.97 2 12 0.012 0.77 9.6 6.5 1 23 275 297 275 297 0.97 3 12 0.00086 0.053 13.2 1.4 3 23 308 328 307 328 0.98 4 12 5.6e-06 0.00034 20.1 2.2 1 23 421 443 421 443 0.98 5 12 0.00077 0.048 13.3 1.7 1 23 448 472 448 472 0.90 6 12 1.1e-06 6.8e-05 22.3 0.8 1 23 511 534 511 534 0.95 7 12 4.6e-06 0.00028 20.4 5.1 1 23 566 588 566 588 0.99 8 12 0.00066 0.041 13.6 5.6 1 23 602 624 602 624 0.96 9 12 6.8e-06 0.00042 19.8 1.7 1 23 630 652 630 652 0.98 10 12 0.00096 0.059 13.1 3.2 1 23 658 680 658 680 0.98 11 12 3.3e-05 0.002 17.7 6.5 1 23 686 708 686 708 0.98 12 12 0.00015 0.0093 15.6 0.3 1 21 714 734 714 735 0.93
Sequence Information
- Coding Sequence
- atggaagttgaaaatataggaatgcCTGTATcaaatgataacaataatatttgcCGTGTTTGTCTTgcaacaaatgaaattaatcaaTGCATTTTTGATGCTAAACGAAATAACTCAAATAATACaaagattaataatttgttagagAAACTTCGTTTATGCAGTGGTATTGAGATATTGGAAAATGATGGTTTACCTGCTACCATTTGtatgaaatgtataataagAATTGATAATGCTCATGAATTAAGAAAGCAGTGTCAGGAGTCCGATATTCAGTTAAGAAAGTtgtatggaaaatttaggaaagaATATGGTACCAATAGATGTAAGCCTACTCAAGACAAATGGTGCCAGACAGATTATCCTCTTTCTTCTGATTCAGTTAAAGTTGAAGATGATATAGCTGGAGTGGATCATAATCCATCTTCGGACATAAATTTAAGTTGTAATGTTAAACTTACTGGAGAACATAAAGGTAATAAAACAAATCATGTGAAACatgatgaattaaataattccttGAATAGACAAAATATTCGTGGTAAATGTATACAAGCAGAATCAGAAAAGAATGTCATTGGAAGAGATGCTTATCGAACAAGAAGAATGACAATGTTCAAAAGAGTAACATCTatagagaatttaaaaaataataaggaaAGACAAAGGCAgtacataaaaaagaaatgggATACTTCAGAAAGTGATCATTTAATAGATGCACATTCTATGAAGTTACATGTTTGTACAAAGTGTAGTAGACATTATTCCAGCAAAAAATCATTAGATAGACATTTAATAACACATCAGGAAAAAACATTCACATGTAACAAATGTAACAAACACTTCTTTCATTTAGATAAATTAGTAGAACATAGCAAATTACACGAGGTTAAAGAGAAACCTAAACCAGTATTATGTAggatatgtaataaaaattttagaaaaactGATACTATGGTCCGGCatttaaatgttcataaaagaGCTAACCCAAAAGAAGTTCTCTCTATTCTGAAAGAAATCAGGGACAAGAGAAAATTAGATAATACCACTGAGTCTGAAAAGGCAGAtgttgaagttaaaaatggTGATGATAAGAAGGAAGTAGAGAAAGATTTCACAGACAATGATGATACAATTTCGGATAAGGCAGAAACTTGTACATTACAGACTGAACGTAGAAATTCTACTTCTTCATTACTATTTTTAGATGTAAATGCTAGTGAAAATGAGTCTTTTGATGATAATACactttataattgtaaatactgTACCAAACAATATACGACTGAGAAATCACTTGAAAAACATATGCTTGTTCATgctgaaaagaaatttatttgtaacgtgtgcaatatgaaattttatcgtcAAGATCGATTACAAAGTCATAAAAATCGATATGGTCACGATGAAAATAACACTTCTCCTGAAATACAAAAACCAGCCGATGAGAAGTCgactattaaattaataaacagcTGGATCAGGGAAGAGCTCGACTCGGATAACGAAGGGAAAGGTTttccttgtaaaatttgtggaaaatCGTATGATACGAAAAAGTCTTTATCGAAGCACCAACTTAATGCTCACAATTCAGAAGAAGAAGCCTGTCCATCCTGTGGTGAAATATGTACTTGTGATGAAAAGGATAAAGAGCAAAATGCAACTGAGGGATCAAAACTATATCAATGTGCCGAATGTAATAAGTGCTTTGAAAATGACCACAAATTGCAAAAGCATATGAGAATTCACGAGCGCCCTAAAGAAGGGCAAGATGTGAATTTCAAACGATTTTTATGCCATATATGTAGTAAAACTTTTAGACACAATACAGGTCTAGTATTTCATATGAGAACACATACTGGCTACAAACCACacgtttgtaaatattgtggAAGAGGTTTTGCATCAAATTCAAACCGCATCAACCACGAAAGAACACATACAGGTGACAGACCGTTTGTCTGTCATTTCTGCAGTGCCGCCTTCGCGAAATCGTGCACTCTTAAAGCGCATATTACGACGCATACTGGAGAAGCAAATTATCATTGCAAAACTTGTGGAAAGTCATTTAGGAGATTGAAATACTTAAAGGAGCATAGATTCACTCATACAGGAGAGAAACCGTATGCTTGCAAAATCTGCGGAACGGCGTACAGTCATTCCGGAAGTTTATTCGTACACgagaaaaaatgtaaagcaCAGTATAATAGTTATCAGCCTAACTCGACGCAAAATACAGAATCGTATTGTCAGTCAGAAACTTCACCGAACGTAACTCCgatcattacaattttaccCCAAGTTCAGTTGAATGTTTCTGATACGTTAAATgcgcaaaataataaaagctaTGTAGATAGTCAGATGATAAACTCCCAggatattaatactttgaaTACTGTCAGTTCGTCGGATCTGCATGTTCATTCGAATTCGGATATTCCTGACGTTTCTTTGACAATTAAAAGTTTCGCCCTGATCAGGCAAATGTTTCAATCGTAA
- Protein Sequence
- MEVENIGMPVSNDNNNICRVCLATNEINQCIFDAKRNNSNNTKINNLLEKLRLCSGIEILENDGLPATICMKCIIRIDNAHELRKQCQESDIQLRKLYGKFRKEYGTNRCKPTQDKWCQTDYPLSSDSVKVEDDIAGVDHNPSSDINLSCNVKLTGEHKGNKTNHVKHDELNNSLNRQNIRGKCIQAESEKNVIGRDAYRTRRMTMFKRVTSIENLKNNKERQRQYIKKKWDTSESDHLIDAHSMKLHVCTKCSRHYSSKKSLDRHLITHQEKTFTCNKCNKHFFHLDKLVEHSKLHEVKEKPKPVLCRICNKNFRKTDTMVRHLNVHKRANPKEVLSILKEIRDKRKLDNTTESEKADVEVKNGDDKKEVEKDFTDNDDTISDKAETCTLQTERRNSTSSLLFLDVNASENESFDDNTLYNCKYCTKQYTTEKSLEKHMLVHAEKKFICNVCNMKFYRQDRLQSHKNRYGHDENNTSPEIQKPADEKSTIKLINSWIREELDSDNEGKGFPCKICGKSYDTKKSLSKHQLNAHNSEEEACPSCGEICTCDEKDKEQNATEGSKLYQCAECNKCFENDHKLQKHMRIHERPKEGQDVNFKRFLCHICSKTFRHNTGLVFHMRTHTGYKPHVCKYCGRGFASNSNRINHERTHTGDRPFVCHFCSAAFAKSCTLKAHITTHTGEANYHCKTCGKSFRRLKYLKEHRFTHTGEKPYACKICGTAYSHSGSLFVHEKKCKAQYNSYQPNSTQNTESYCQSETSPNVTPIITILPQVQLNVSDTLNAQNNKSYVDSQMINSQDINTLNTVSSSDLHVHSNSDIPDVSLTIKSFALIRQMFQS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00962682;
- 90% Identity
- iTF_00962682;
- 80% Identity
- -