Basic Information

Insect: Megachile rotundata
Gene Symbol: -
Assembly: GCA_000220905.1
Location: NW:3353111-3381139[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 1.7e-06 0.00011 21.7 1.7 1 23 307 329 307 329 0.98

2 9 1.6e-08 1e-06 28.1 1.6 3 23 337 357 335 357 0.98

3 9 0.00013 0.0078 15.8 0.4 1 23 363 385 363 385 0.98

4 9 7e-07 4.3e-05 22.9 1.5 1 23 391 413 391 413 0.99

5 9 1.2e-05 0.00076 19.0 1.7 2 23 527 548 526 548 0.96

6 9 1.6e-09 9.8e-08 31.2 1.6 1 23 554 576 554 576 0.98

7 9 0.00036 0.022 14.4 0.6 3 23 584 604 582 604 0.97

8 9 4.8e-05 0.0029 17.2 1.4 1 23 610 632 610 632 0.99

9 9 0.011 0.66 9.8 0.8 1 23 638 662 638 662 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	1.7e-06	0.00011	21.7	1.7	1	23	307	329	307	329	0.98
2	9	1.6e-08	1e-06	28.1	1.6	3	23	337	357	335	357	0.98
3	9	0.00013	0.0078	15.8	0.4	1	23	363	385	363	385	0.98
4	9	7e-07	4.3e-05	22.9	1.5	1	23	391	413	391	413	0.99
5	9	1.2e-05	0.00076	19.0	1.7	2	23	527	548	526	548	0.96
6	9	1.6e-09	9.8e-08	31.2	1.6	1	23	554	576	554	576	0.98
7	9	0.00036	0.022	14.4	0.6	3	23	584	604	582	604	0.97
8	9	4.8e-05	0.0029	17.2	1.4	1	23	610	632	610	632	0.99
9	9	0.011	0.66	9.8	0.8	1	23	638	662	638	662	0.95

Sequence Information

Coding Sequence: ATGGCGCTCTCGGCACAGAACCAGTCGACGTCGTACGTGAACTTGTATTACTCGATCGTCCAACGTGCGGCGACGCGCTACTTTAAGGAATATTACAACTCCGATACTGGCGCGCCCTACGTATTGTACAAGGACAACATGGAGAGACCCCAGGGGCAATGGGGCCCCGGGCCGGGATCTCTCCAGGACGGGGGACTGTATccgcagcaacagcagcagcagcaacagcagggCTCCTCCTCGTCCGGCAGTCCACAGCAGGCCTGTGGTCCTCCCGTCGAAGGAGAAAGCGGTCCCCCGCCTTCGTTGGCCTCTCCAGTGCCCTCGCCGTACCCCTCGGCACCGCCTGAGCCTCAAGCCTTAACCCCACCCGACGACGATATACAATCGAGCCAAGCCACCtcgcaacagcagcagcaacaacaacaacagcaacagcagcagacGCAACAGCAAgtgcaacagcagcagcagcagcagcaacagcagcagcagcaacaacaacagcagcagcagcaggttcagcagcagcagcaacagcaacagcaacaacagcagaCGCAGCAGCAGGATCATTCGCCTCAGCAACAACTGACGCCGCACGAAGTGGACCGCGCGGACTGTTTCCCTGGCGCCGGGGAGCTGCAGCAGTACCCGCAGCACTATTTCAAAGAGGCGAGGCCGCATCCGTCGCCATCGGTGCCCCCGCACATGCTCACGCCCGGCGGCTTTTCCGCGTTGCACTATCTGAAGCAACCGGGCGTGATGCTGACGTCCCTCGGGCAAGGGGACGGCGGGCCCAGCCTGGATCCGCATCAGTACGCGAGCCCCGGGGCACCGAACATGACCACCGGTCTGCCCGATATCGTTCAGCAGAGCGGCAAGTCGGGCAAGGGGGCGAACAGCGATCTACGTTTGTTCAAGTGTCTGACGTGTGGGAAAGACTTTAAACAGAAGTCGACGTTGCTGCAACACGAGCGGATCCACACGGACAGTCGGCCGTACGGGTGTCCAGAGTGCGGGAAGCGGTTCAGGCAACAATCGCATCTAACGCAGCACCTTCGCATACACGCGAACGAGAAGCCGTACGCTTGCGTGTACTGCGAGCGTACGTTCCGGCAGCGTGCCATCCTCAACCAGCATCTGCGCATCCACTCGGGTGAGAAGCCATACCAATGTCCGGAGTGCGGAAAACACTTCCGTCAGAAGGCGATCCTGAATCAGCACGTCCGCACACACCAAGACGTGAGCCCGCATCTGATCTTCAAGAACGGGATGACGCCGACGCTCTGGCCGCAGGACGTGCCGTTTCCGCCCGAGGAGGGCAAAGAGGAAGTGGCGTCGACGTTCGGCGACACGGACACCCAATCGGGCGCGTTCAGCCCGGCCCCGGACGCTAATTCCATCCAGTATCCCGCGTACTTCAAGGACCCGAAGGGCGGTAATCACGCGGTGTTCGGTCCCGGGGGCACGGGCAGCTTCGGCGCCCTTCAGTACATCAAGCAACAGGGCGGCACCAAGAGCTGTTTACCGGACGTGATACAACACGGTCGCTCGGCGGGGATGCCGTTGTACGTCCGATGTCCGATCTGTCAGAAGGAGTTCAAGCAAAAGTCGACGTTGTTGCAGCACGGTTGCATACACATCGAGTCGAGACCGTACCCCTGTCCGGAATGCGGCAAGAGGTTCAGGCAACAGTCGCATCTGACCCAGCACCTCCGCATCCACACGAACGAAAAGCCGTACGGCTGCGTGTACTGCGGACGCAATTTCCGCCAACGTACCATCCTGAACCAGCATCTGCGCATCCACACGGGCGAGAAACCGTACAAGTGTCAACAGTGCGGCAAAGATTTCCGTCAGAAGGCGATACTGGACCAGCACACGCGCACCCATCAAGGCGACCGACCGTTTTGCTGCCCCATGCCCAACTGCAGGCGGCGATTCGCCACCGAGCCCGAGGTGAAGAAGCACATCGACAACCACATGAACCCGCACGCGGCCAAAGTGCGCAGGAATTCGAGCAGCGACTCGAAACCGCCCGGCACGCCNNGGCTGGGCCCGGTGCCGGTCCCTAGGGGTCTCACGCCGACGGTCGTCAAGCCGGAGCTCTACTTCCCGCAGTGTTACGCGCCCGCGTTCAATCATCAGCCCCCGGTATCGACGGCGCAGTTCCCGGCCCAAGCGAACGGAGTGACCGTCGCCGGCGAGTTCAAACCACCGACTGGTCTGCCGCCGCAGTGA
Protein Sequence: MALSAQNQSTSYVNLYYSIVQRAATRYFKEYYNSDTGAPYVLYKDNMERPQGQWGPGPGSLQDGGLYPQQQQQQQQQGSSSSGSPQQACGPPVEGESGPPPSLASPVPSPYPSAPPEPQALTPPDDDIQSSQATSQQQQQQQQQQQQQTQQQVQQQQQQQQQQQQQQQQQQQQVQQQQQQQQQQQQTQQQDHSPQQQLTPHEVDRADCFPGAGELQQYPQHYFKEARPHPSPSVPPHMLTPGGFSALHYLKQPGVMLTSLGQGDGGPSLDPHQYASPGAPNMTTGLPDIVQQSGKSGKGANSDLRLFKCLTCGKDFKQKSTLLQHERIHTDSRPYGCPECGKRFRQQSHLTQHLRIHANEKPYACVYCERTFRQRAILNQHLRIHSGEKPYQCPECGKHFRQKAILNQHVRTHQDVSPHLIFKNGMTPTLWPQDVPFPPEEGKEEVASTFGDTDTQSGAFSPAPDANSIQYPAYFKDPKGGNHAVFGPGGTGSFGALQYIKQQGGTKSCLPDVIQHGRSAGMPLYVRCPICQKEFKQKSTLLQHGCIHIESRPYPCPECGKRFRQQSHLTQHLRIHTNEKPYGCVYCGRNFRQRTILNQHLRIHTGEKPYKCQQCGKDFRQKAILDQHTRTHQGDRPFCCPMPNCRRRFATEPEVKKHIDNHMNPHAAKVRRNSSSDSKPPGTPXLGPVPVPRGLTPTVVKPELYFPQCYAPAFNHQPPVSTAQFPAQANGVTVAGEFKPPTGLPPQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00684322;
90% Identity: iTF_00684322;
80% Identity: -