Mrot006368.1
Basic Information
- Insect
- Megachile rotundata
- Gene Symbol
- -
- Assembly
- GCA_000220905.1
- Location
- NW:705143-708892[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.1 6.3 6.7 7.8 1 23 32 55 32 55 0.96 2 13 1.7e-06 0.0001 21.7 0.3 1 23 61 83 61 83 0.97 3 13 2.6e-06 0.00016 21.1 1.3 1 23 89 111 89 111 0.97 4 13 0.00089 0.055 13.2 0.8 1 23 117 139 117 139 0.98 5 13 0.00012 0.0073 15.9 3.8 1 23 145 168 145 168 0.96 6 13 0.00042 0.026 14.2 2.1 1 23 183 206 183 206 0.94 7 13 0.00036 0.022 14.4 0.1 1 23 214 236 214 236 0.96 8 13 3.8e-06 0.00024 20.6 1.7 2 23 243 264 243 264 0.98 9 13 2.6e-06 0.00016 21.1 1.4 2 23 271 292 271 292 0.97 10 13 0.022 1.4 8.8 0.8 2 23 330 352 329 352 0.96 11 13 6.5e-06 0.0004 19.9 1.0 1 23 358 381 358 381 0.98 12 13 0.12 7.1 6.5 0.1 2 23 387 409 386 409 0.95 13 13 2.5e-05 0.0015 18.1 0.6 1 23 414 436 414 436 0.98
Sequence Information
- Coding Sequence
- ATGCttgttttgtacaaatatctGTTCCTGCGAAAAAAGATACATGATGTTATAAAGataaaaaaGTCCCGAAGATCCGCCTCCCGACCAATTCACGAGTGCTTCAAATGCGGAGCGTGTTTCTGTCACACCATAAAACTAGTGGAGCACCTGAAGAACCTCCACGGGATCGACAGAGCGTTCAGCTGCGACGAGTGCGGCAAAACGTTCAGAAGCCCCATGAACATCGCCCGCCACAAACTAATACATACAGGCTCGAAAAGATTCGCCTGTGACCTGTGCGACTACAGAACTAACCAGAAATCGAATCTGGAGAGCCATCAGCGTCGTCACATGAAGGATTACGCTTTCAAGTGCGACCAGTGCGACAAGGGTTTCTTCCTGAGGAGGGAATACCTGGAGCACGTAAACGTCCACACTAGAAAACAACTGTTCCGCTGCGATCACTGCGACAAATCGTACCTTTACAAACGAAATTTAACTACACATCTCAGGGCTCAGCACCCGAGTGTCCTGCATGTGGAGTCCAGCAGCGACAAACAGAAACACGCATGCAGTGTCTGCTTGGAGAGTTTCGCGAGGAAGTTGTCTTTGAAGAAGCACTTGAAGCAACGTCACGGTTTGCACGAGAAGACTAATTATTTGTGCGATCTGTGCGGGGCTGTGCTGTCCTCCAGAAGAGGTTTGGTGGTCCACAGACGAACGCATACGAATGAGAAGATCGCCAAATGTGATATGTGCGAGAAACAGTTCACTAGCAAACAGAACCTTGAACTTCATCGACGGGTGCACACCGGTGAAAAACCTAATGTTTGCAAACAGTGCGGGAGAAGGTTCACGCAACGTACTTCTTTGATACTGCATCTGAGGTATCATTCGGGGGAGAGACCGTACCACGACTGGACCAATGAACAAGAGGAGATTGCTGGCTGCGAAGAAAACGAGGATGTTCTAGATTCAGAACAGAAattcgaAGGAAACGAAAAAAGCTGTGATATTTGCCAAGAAAAGTTTCACTTCGTGACGAGATTAGTAGCCCACTTGAGGATCGTTCATGGTATCCAAAGACCTTTTAAATGTGGCACCTGTGATAAGACGTATCCTCAGCAGTTTATGCTGAACGCCCATGTGAAGAAATCACATACACCCAAAACGATACCATGTGCTCAGTGCAGTTTCATGGGGGTGGACACTTCTGATGTTGAAAGACACATTAAACGACAACATAGCGAGGTCAAATTCACTTGCGAGATTTGTAGCGAGAATTTTAACGATAAGGAGTCCTTAGTGACGCATAGAACGATGCACAATTTTATGCCGTTTCAACAGTGCAATGCTTGTGGTAGCACCTTTGATGACGTGTACAGGTAG
- Protein Sequence
- MLVLYKYLFLRKKIHDVIKIKKSRRSASRPIHECFKCGACFCHTIKLVEHLKNLHGIDRAFSCDECGKTFRSPMNIARHKLIHTGSKRFACDLCDYRTNQKSNLESHQRRHMKDYAFKCDQCDKGFFLRREYLEHVNVHTRKQLFRCDHCDKSYLYKRNLTTHLRAQHPSVLHVESSSDKQKHACSVCLESFARKLSLKKHLKQRHGLHEKTNYLCDLCGAVLSSRRGLVVHRRTHTNEKIAKCDMCEKQFTSKQNLELHRRVHTGEKPNVCKQCGRRFTQRTSLILHLRYHSGERPYHDWTNEQEEIAGCEENEDVLDSEQKFEGNEKSCDICQEKFHFVTRLVAHLRIVHGIQRPFKCGTCDKTYPQQFMLNAHVKKSHTPKTIPCAQCSFMGVDTSDVERHIKRQHSEVKFTCEICSENFNDKESLVTHRTMHNFMPFQQCNACGSTFDDVYR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -