Mrot000419.1
Basic Information
- Insect
- Megachile rotundata
- Gene Symbol
- -
- Assembly
- GCA_000220905.1
- Location
- NW:903468-907917[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 7.5e-06 0.00046 19.7 4.8 1 23 321 343 321 343 0.97 2 12 4.5e-05 0.0028 17.2 3.9 1 23 347 369 347 369 0.98 3 12 0.00037 0.023 14.4 3.1 3 23 376 396 374 396 0.96 4 12 0.00018 0.011 15.3 3.5 1 23 448 470 448 470 0.98 5 12 0.00058 0.036 13.7 1.4 1 23 475 497 475 497 0.97 6 12 4.9e-05 0.003 17.1 2.6 1 23 546 568 546 568 0.99 7 12 4.3e-05 0.0027 17.3 0.5 2 23 576 597 575 597 0.97 8 12 7.2e-07 4.4e-05 22.9 2.1 1 23 607 629 607 629 0.96 9 12 0.00016 0.01 15.5 1.6 1 23 635 657 635 657 0.97 10 12 0.00012 0.0072 15.9 0.7 1 23 663 685 663 685 0.98 11 12 3.5e-06 0.00021 20.7 2.0 1 23 691 713 691 713 0.96 12 12 6.2e-05 0.0038 16.8 0.3 1 22 719 740 719 740 0.96
Sequence Information
- Coding Sequence
- atgtatattttattacaaatagctatgttttataataatttagcaaatttcttGCACTACAGTTATACTTTAACGTATGAAcAAAAAATGACGGAATACTTTGATTTACCGCTTAATATGGACAGAATCTGCAGAATTTGCCTTACAGAGGGTACGAATTTATCTTCTATTTTTTGTACCGATCAAGAAGTAAATGATTTTTCTGATCTTCCACAAAAAATACAAGTTTGTGGATCAGTAGAAATTCATGAACAAGATGGATTACCTTCATTAATTTgtgatatttgtatttataaagcAAGCGTTGCTCATGAATTTAGGCAACAATGTCAGCATTCTGATGCCAAATTAcgaatgtattataataaaccaGCAAAAATTACTATTgtgGATACATGCACACAAACAGAACCAGAGATAAGAACAGCATTATCAAAAGAGCAAGTTAGCGAAGAAGATTATTTTGTAAAGGAGGAAATGCAAGGAGcatcatcaaattctcaagaatttatacaaaataacaatTCATATTGTAGAAGTGAATCTGGTTTAAATACTGGCCAAATTGAGATGCAGAATGAAAAACTTTTTATATGTTCTATTGGATTTGAAACAACTAAGGAATCTCAGAAGGAAGCTTGCAGTTCAGAAAATGATATACATCAAACTTCTCTTATAGAAGAAGGTACTAATGATGTTTCTGAAACTAtagatatacaaaataaatctgaagaaaTTCCAGACACTAGTCAAAATATGGAAGAAGATGACAAGAAACAAGAGGATGAATTTCTTgacgaaaatttattaaatgatgaTATCAAAGAGGAAGAAGTTTTACAGAAACGTACATCAGGTAGAAAAGTTAAATCAGTGCCTAATAAAACTTACAGTGAAGATGAGATCgatgataattattatgatttaaGTAATGATGGTCAAGATTCTGGAgactcaaaatttaaatgtaaaatatgttcaaaatgttttaGTACACAGAGAGGTTTAAAAAAACATTCCCTTGTTCATGAAAAAAAGCATAAGTgtaatatttgttcaaaaatgttttacaaacAGGAGAACATGGAGAATCACAGAAAGATACATGCATCCAAACCCCTTGCATGTCAGTTATGTCATGCATGTTTTTCTAAGCCTCAAAGTCTTGTGCGCCATTTAAAATCCCATACAGAAAAAGTAAATGACAtgattaaacaaattaatacagATGAACAAAAGGATAATAATGAACcgaagaaagaaatgaaacttgAAGATGATACAGATGATGAAAGTGGTACTGTTAATGAaggttataattttgaaaatgcacCTGAATTGtacaaatgtgaaatttgtagTCAGTATTGTTCTTCtttgaaaaatctaaaaagaCATACTCTGGTACATggtgataaaaaatattcatgcaCTGTATGTAAAAAATGGTTCTTCAGGCCAGatactttaaaaaaacatGCAGAAAAACATGGACATGGATTATTAGACAATTTagttgataataataaattctttgatTCTGATGATGACTCTTGTCCAAATACTACAAAAAGTACTGAACAAGAGAGTGAAAGTgttaaaaaggaagaaagtgATGAAGATGGTTCTGGTGAATATAAATGCCAACATTGTGATAAAGTCATGGCTACGAAGAAAGGTCTTAGGCGCCACGTATCTACACACAAACCGAAAGCTGAACCAGTTACttgtgaaatttgtggaaaGATTTGTGCTAGTCAAGCTCGTCTTGTACTTCATCAAAGGACACATGTACCAAAAGAAAAAGTTCCACGAGAATACTTGTGCCACATATGTAGTAAAGTGTATCCAAGTAACTCTTCCCTCACGTATCATATGAGAACTCATACTGGTATTAAGCCACATGTTTGTAAAACTTGCAATAGTGGATTTACTACAACAACCAGTTTAGCAAATCATATTAGAATTCATACTGGTGATAAACCATTTGTTTGTCATGTATGTAGTGCTGCATTCGCTGTAAGTTCTGCTTTTAGACGACATTTAACTCGTCATACTGGAGAAGCAAACTATTTGTGTAAAACATGTGGTAAAGCATTTAAAAGACTAAGTACTTTAAAAGAACATACTTACACTCATTCTGGTGAAAAaccatatgtatgtaaaacaTGTGGAGCAGCATATAGTCATAGTGGTAGCTTATTTGCTCATCAAAAACGTTGTCGAGCTCAGTATGGAGAGATAGTTGTAGAAGAGCACCATCATTCAGTTGCTCATCATattcatgtaaataatgtGCAATCTGCAGTACGATCACTTGCTGTGATAGgacaaatgttttaa
- Protein Sequence
- MYILLQIAMFYNNLANFLHYSYTLTYEQKMTEYFDLPLNMDRICRICLTEGTNLSSIFCTDQEVNDFSDLPQKIQVCGSVEIHEQDGLPSLICDICIYKASVAHEFRQQCQHSDAKLRMYYNKPAKITIVDTCTQTEPEIRTALSKEQVSEEDYFVKEEMQGASSNSQEFIQNNNSYCRSESGLNTGQIEMQNEKLFICSIGFETTKESQKEACSSENDIHQTSLIEEGTNDVSETIDIQNKSEEIPDTSQNMEEDDKKQEDEFLDENLLNDDIKEEEVLQKRTSGRKVKSVPNKTYSEDEIDDNYYDLSNDGQDSGDSKFKCKICSKCFSTQRGLKKHSLVHEKKHKCNICSKMFYKQENMENHRKIHASKPLACQLCHACFSKPQSLVRHLKSHTEKVNDMIKQINTDEQKDNNEPKKEMKLEDDTDDESGTVNEGYNFENAPELYKCEICSQYCSSLKNLKRHTLVHGDKKYSCTVCKKWFFRPDTLKKHAEKHGHGLLDNLVDNNKFFDSDDDSCPNTTKSTEQESESVKKEESDEDGSGEYKCQHCDKVMATKKGLRRHVSTHKPKAEPVTCEICGKICASQARLVLHQRTHVPKEKVPREYLCHICSKVYPSNSSLTYHMRTHTGIKPHVCKTCNSGFTTTTSLANHIRIHTGDKPFVCHVCSAAFAVSSAFRRHLTRHTGEANYLCKTCGKAFKRLSTLKEHTYTHSGEKPYVCKTCGAAYSHSGSLFAHQKRCRAQYGEIVVEEHHHSVAHHIHVNNVQSAVRSLAVIGQMF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00962662;
- 90% Identity
- iTF_01123204;
- 80% Identity
- -