Basic Information

Insect: Megachile rotundata
Gene Symbol: Snai1
Assembly: GCA_000220905.1
Location: NW:1117574-1122850[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 0.56 35 4.3 0.0 1 23 214 241 214 241 0.93

2 13 0.0049 0.3 10.8 0.1 1 23 246 268 246 268 0.95

3 13 1e-05 0.00062 19.3 1.2 1 23 276 298 276 298 0.98

4 13 4e-06 0.00025 20.5 0.2 2 23 306 327 305 327 0.97

5 13 3.5e-07 2.1e-05 23.9 0.7 1 23 333 355 333 355 0.99

6 13 1.6e-05 0.00098 18.7 2.0 1 23 362 384 362 384 0.99

7 13 3e-06 0.00018 20.9 0.6 1 23 390 412 390 412 0.96

8 13 8.2e-06 0.0005 19.6 0.2 1 23 418 440 418 440 0.98

9 13 4.2e-07 2.6e-05 23.6 1.2 1 23 446 469 446 469 0.96

10 13 2.2e-06 0.00014 21.4 0.5 1 23 475 498 475 498 0.96

11 13 1e-06 6.3e-05 22.4 2.0 1 23 504 526 504 526 0.99

12 13 5.5e-05 0.0034 17.0 0.4 1 23 532 554 532 554 0.94

13 13 0.00017 0.011 15.4 0.1 1 23 560 584 560 584 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	0.56	35	4.3	0.0	1	23	214	241	214	241	0.93
2	13	0.0049	0.3	10.8	0.1	1	23	246	268	246	268	0.95
3	13	1e-05	0.00062	19.3	1.2	1	23	276	298	276	298	0.98
4	13	4e-06	0.00025	20.5	0.2	2	23	306	327	305	327	0.97
5	13	3.5e-07	2.1e-05	23.9	0.7	1	23	333	355	333	355	0.99
6	13	1.6e-05	0.00098	18.7	2.0	1	23	362	384	362	384	0.99
7	13	3e-06	0.00018	20.9	0.6	1	23	390	412	390	412	0.96
8	13	8.2e-06	0.0005	19.6	0.2	1	23	418	440	418	440	0.98
9	13	4.2e-07	2.6e-05	23.6	1.2	1	23	446	469	446	469	0.96
10	13	2.2e-06	0.00014	21.4	0.5	1	23	475	498	475	498	0.96
11	13	1e-06	6.3e-05	22.4	2.0	1	23	504	526	504	526	0.99
12	13	5.5e-05	0.0034	17.0	0.4	1	23	532	554	532	554	0.94
13	13	0.00017	0.011	15.4	0.1	1	23	560	584	560	584	0.94

Sequence Information

Coding Sequence: ATGCAAATTGCCGAAAAGATGACGGCTGATTCCGAGAAGGATATCGTTCATTGTTTAATATGTAATAGTAAAGTCGGCGTATCTACTAGGAATAGTATACGTATCTTTAATGAAAATTCTGTAACATCATCGGAGAAACCACTTGTAGATACAATTTGTAATGTCTTAGAAATAGATTTAAATGAAGAGAATGCACATTCTCTTGTTAtgtgtaaaaaatgttataagtTGTTCAATGAGGTAAATAAGGTTGATGAGCTTGAAAGTCGATTGACAGAGGTAAAACTAGaacttttcaataattataagaaGACTATCAAAAAGATATCCGATGTTCAAACCGAAGAAGAATATAATGATCATGATTATATAGAAAATGCAGAAAGTCAATGTACAGACACAGATATGAAATATTCGCAGAGggaTGAAGAGGAAATGCAAGAGGAAGAGTTGGAGGGTGAAGAAGAGAGAttggaagaggaagaagaaccTTCCTGTGAACCAGAAGAAGttgttcttaaaattgaacaaatagCTGAAGCAAGTAAtacagaagagaaaaagaggatGAAAAGGTCAAAAGTTTCAgcaaaagttgaaattttgcaagaaCAAATTGTGAGTAGAGATGGTTCAATATACACCTGTTTATTATGTGGAACCGAAGAAGATAAAACTGTAGGAGATGCAAAATCTATTATTGCTCACATGAAAAGTGTGCATGAAACTCGTTTGTATATTTGTGACATATGCGGAGACgattttaaaaaaaggaatGAACTGTCTGTTCATCTCGATGATCACGTTGCTAAGGAGGAGGGAGATTTCCAGTGTGAGATatgtaatagaatatttagtaatttgcgGTTGTTCAGAATTCATAAACGGATACATTATCCCCAAGTAAAATCATGGCCATGCGAAACATGTGGTAAACGATATAGTTCCAGAAATTTACTAGAGGAACATATCAATACACATACAGGCGTTCGTCCATACGTATGTGAAAACTGCGGTAAAGATTTTGCTTCCAAATATACATACAAGGCACATATAAAAACGCACGAAGTACGACCTCGTCCGTACGAGTGTTcacaatgtaataaaacattcTTGAGTCAACAAAATCTTAATCAACATGAAAGAACTCATAATGGTGTCAAGGAATATGTTTGTCATCAATGCGGAAAAGCATTTGGTTCTCCACATAATCTGGAAGTGCACAATATAGTACATACAGGCTACAAACCATATATATGTAGGATGTGTGGTAAAGCGTTTGCTCGTAAAGCTGAAATAAGGGATCATGAAAGAACTCATACTGGTGAAAAACCGTATCAGTGTGAATTTTGTGGAGCTACTTTTAGTCAAAgatcaaatttacaatcgCATAAACGTGCGACGCATTACAATGACAAACGATATAAATGTGACGATTGCGGGAAGGGATTTAAACGACGAAGACTGTTGGATTATCATATAAAAGCAGCTCATACTGGTGAAAGACCATATAAATGCGAAGAATGTTCAGCAACGTTTGTTTATCCGGAACATTTCAAAAAGCATATGCGTATACATACTGGAGAGAAACCTTATTTATGTGAGgTTTGTGGTAAAGCATTTAATAGTAGAGACAACAGGAATGCACATCGATTCATACACAGTGATAAAAAACCATATGAATGTTTAGTATGCGGTATGGGATTCATGCGGAAACCTTTGCTGTACGCTCACATGCAAACTCAAGGTCATTTGAACGACACTATCGTAGTTAATCAACCGCGACTAACTACAGAAGACGATCAGGTAATGGCGATTCCTGATAACAACGTAGAACTTCTAATGGACGAAGCAGAAAATGATCAGTTGGAGGAAACTGAATTGTATGTGACCGAATTAAAAGATCACGTTATTATACAACAAAATGATGACCAGATATATAACGAAGAAGATGTACTAAATATTCCGGCAGAAGAAAATGTAGATGAAGAAGTAGGCCATCTGGTTAACGAAGAGATCGACTTTGTTGAAAATGAGGGAATGGAGTGTAAAGATGAAGATTCGGAACAAGTAGAAGAAGTATATGCTTATAACGAAACCGAGGATGGTGAAACAATAGTTGTACCAGCTACCTCGGAGTACAAAGAAGTAGGAGAGGAGAAGAACGCGGTTCGATTAGTGCAAATTCGATTTCCAACATCGGTTGGCGGCGAAGGTCGAAGTTGGTTAAGCTTAGTACCAAACACATGA
Protein Sequence: MQIAEKMTADSEKDIVHCLICNSKVGVSTRNSIRIFNENSVTSSEKPLVDTICNVLEIDLNEENAHSLVMCKKCYKLFNEVNKVDELESRLTEVKLELFNNYKKTIKKISDVQTEEEYNDHDYIENAESQCTDTDMKYSQRDEEEMQEEELEGEEERLEEEEEPSCEPEEVVLKIEQIAEASNTEEKKRMKRSKVSAKVEILQEQIVSRDGSIYTCLLCGTEEDKTVGDAKSIIAHMKSVHETRLYICDICGDDFKKRNELSVHLDDHVAKEEGDFQCEICNRIFSNLRLFRIHKRIHYPQVKSWPCETCGKRYSSRNLLEEHINTHTGVRPYVCENCGKDFASKYTYKAHIKTHEVRPRPYECSQCNKTFLSQQNLNQHERTHNGVKEYVCHQCGKAFGSPHNLEVHNIVHTGYKPYICRMCGKAFARKAEIRDHERTHTGEKPYQCEFCGATFSQRSNLQSHKRATHYNDKRYKCDDCGKGFKRRRLLDYHIKAAHTGERPYKCEECSATFVYPEHFKKHMRIHTGEKPYLCEVCGKAFNSRDNRNAHRFIHSDKKPYECLVCGMGFMRKPLLYAHMQTQGHLNDTIVVNQPRLTTEDDQVMAIPDNNVELLMDEAENDQLEETELYVTELKDHVIIQQNDDQIYNEEDVLNIPAEENVDEEVGHLVNEEIDFVENEGMECKDEDSEQVEEVYAYNETEDGETIVVPATSEYKEVGEEKNAVRLVQIRFPTSVGGEGRSWLSLVPNT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00734079;
90% Identity: iTF_01123198;
80% Identity: -