Mrot001437.1
Basic Information
- Insect
- Megachile rotundata
- Gene Symbol
- pol
- Assembly
- GCA_000220905.1
- Location
- NW:52551-60553[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.1e-09 1.1e-06 27.4 0.0 1 40 467 506 467 511 0.90 2 2 1.1e-09 1.1e-06 27.4 0.0 1 40 552 591 552 596 0.90
Sequence Information
- Coding Sequence
- ATGACCGCTACGGGTCAGGTGGAGGAAACAAATACAAcgtTCGATATACAAAACAACGCGCAACATTCCGATCCCGATCCGTtgtgtttaggaattttcgaaattactcCCGCACAACGAAAAGAACtagatcaatttttaaataccgaATTGCCTCCACCCCCTCTTCGACCTTCGTGCACCACACTAACGGAACATCGGATTGACGTAGGGAATAGCAGGGCGATTAAACAACGAAACTATCTCGTCTCGCCGGTTGTACAACAAGCCATTTATACCGAAGTAGATAAAATGTTAGAAGACGGAATTATCGAACCATCGCATAGCGAATGATCTAGTCCTATTGTAATGGTCAAGAAATCGACGGGAAAATATCGGTTTTGTTTAGATTTTCGGAAAGTAAATGaagtttctaaaaaatatGCGTATCCCTTACTGAATATGACAGGAATATTAGATAAATTACGAGCCGCGCATTACTTGTCCACTCTAGATTTGAGTCAAGCATATTTCCAGATTCCGTTAGAAAAGAGCAGTAGGGAAATCACTGCTTTTACAGTACCGGGAAAAGGACTTTTCCATTTCGTTCGTATGCTGTACGGTTTAACGGGAGCCCCCGCCACCTTCCAACGCTTATTAGACAAATTGATCGGTCCTGAAATGCAACCACACGCGTTCGCTTATTTAGACGACATTATTATTGTAACGGAGACATTTGAAGAACATTTGCATTGGTTAAGAATagttttcagaaaaattactACCGCGGGCTTGACAATTAATCCCGAAAAATGCGAATTTTGCCGTTCCGAAGTCCGTTACCTAGGTTTTATTGTCGGTAAGGAAGGCCTCCGAATAGATCCCGAGAAAGTAGCGCCGGTGTTGGAGTATCCCGTTCCGAAAAACATTAAACAATTACGAAGATTTCTGGGAATGGGCTCATGGTATCGTCGTTTTATTCCGCATTTCGCAACAATAACGGAGCCCCTAACGCGACTATTACATCTTGACGAATGGAAGCTAGTAGATCTTGACGAGTGGAAACTAGTAATACCGCAAGATCAAAGACCCGAAATTTATCGCGAGGCACATGATCAGCCTCAGGCCGGACATTTAGGGGTGGAAAAAACCTATGATCGCGTAGCCATACGATATTATTGGCCCGGAATGTATAAGGATATCGCGGAGTATGTGCGACGCTGTACCGTTTGCCAACGTACCAAGGTCGAACAGCTGGCTCCGGCAGGTTTGATGGGATATCGTATCGCGGAGAAACCGTGGTGGGACATTATCGCCGCGGATATTATGGGTCCGTTTCCGCGAAGTCTTTCCGGCTTCATaaattatttcattataaatataaagatgCCTCCAGTCAAAGGTTGTTTTCGAAATTATACCGAAGAGGCGATGAAGAGAGCTATTGAAGATGTCCGCTTGCATAAAACACCAATAAGGGCGGCGGCACGTAAATTTGGCGTTCCACGAATCACTTTGAAATACAAAGTGGAAGGGAAATCACCGATGGAGAGAAAAATGGGACCTCCTCCAGTTTTAAATCAAACGGAAGAAAATGAGATCCGTCAATGGATAGAAAAAATGGCCTTGGCTGGTTTCCCAatgCCTCCAGTCAAAGGTTGTTTTCGAAATTATACCGAAGAGGCGATGAAGAGAGCTATTGAAGATGTCCGCTTGCATAAAACACCAATAAGGGCGGCGGCACGTAAATTTGGCGTTCCACGAATCACTTTGAAATACAAAGTGGAAGGGAAATCACCGATGGAGAGAAAAATGGGACCTCCTCCAGTTTTAAATCAAACGGAAGAAAATGAGATCCGTCAATGGATAGAAAAAATGGCCTTGGCTGACGTAAAACGTGAAAATCCATTTAAAATTGATCGTCCTGGTAATAGCTGGATAAAGGGTTTTTTTAGTAGACATCCTACAGTATCAAAAAGAGTGGCACAAAACCTAACAATTTCACAAGCGGCAGTCACCAGTGACAAGATATTCAATTGGTTTTCTGAAGTATATGGCTACTTGAAGAAGAACGATGTTGATACAATCTTGGATGACCCATCGCGGATTTTCAATTGCGACGAAACGGCATTCTTTTTAAATCCTAAGGGCAACAAAGTCTTGACGAAAAAAGGATGTAAAACTGTTTACCAACAAATTAATCCAGATGAGAAGGAGTGTCTGACAGCATTATTAACGGGCAGCGCTAGTGGTGTAGTTGCACCTACAGTagttttatacaaatacaaacGTATACCCCAAGAAATTGCTATCAATTTTCCCCAAAAGTGGGGTTTGGGTAAAACTGACTCAGGGTGGATGACATGCGAAGCATTCTTTGAGTTTGTTGCAGATATATTTTACCCATGGTTAGTAGCATCAAAAATTACGCTTCCTGTCATTCTTTTCATGGATGGACACGCCTCGCATTTAAGTTTACAAACGAGCCAGTTTTACGATAAAAACGTAAACATACCGGTACAGGAACAACAAATTCAAACCGAAACTGTGGAAAAACATTTGTCGCGAGAGGAATATTTGAAGCAAGGCTTgcgatttttaaatgaaaatatcgaaacgGAGAAAATAAACGCATTTCGATGTTCATCAGAAGAGTGGACCGGGAATCCGCAAGACACGTCTCTATTTCTCCTATGGAAAGGACTCcaaaatgaatttgaagaatattccACTCCAGGCGAGGAATTTGTACATCACAATGTAAATCCAAGGGCGTTACCTTTCGACAATAATACTCAAGTTAGAGATCTTGTCAACATGGACAATAATGAACCCGTCTCCGTTTTTGATATAACCATCCCAGATGAAGAATCTGTATACGATAACATTATTCCAGCAGTACCGATTCAGGAGAGTCATAACAATATAAATCAACAACCTACCGACGATAATACGAATACATCGCTGTTGATCGACAATGCGAATAGAACTGTTGGTCAAAGTTCAAATAATGACACTTCTCAAGCTGTACTACTCGAAGACAGCATAACAACCGAAGATCCTGTgctacttgaaaatttgaccaCATTGCATGTTTCGCCTATTGCTAGCACatcaaataatattccaaGCCCATTCAAAAGGCATTTTTATTGTCCACGTgtggaatataaaaaaacacaCAAAAAGAGAATACCAAAAGAAAAGATGCGTTTCATTGCCTCAGGAGAACTGTGTCAGCAATATTTcctgaataaaataaagaaaaaagaagagatgAAACGTTTAAAAGAAGAGCGCGTAGCagaaaggaaaaggaaaagggaggaaaaagagaaagcTAAAAATAATACGACACgtcaactaaaattaaaaagagcaaaaaatgttttaaaatattcatctgAAAGTTCGAATTCTAGTTAA
- Protein Sequence
- MTATGQVEETNTTFDIQNNAQHSDPDPLCLGIFEITPAQRKELDQFLNTELPPPPLRPSCTTLTEHRIDVGNSRAIKQRNYLVSPVVQQAIYTEVDKMLEDGIIEPSHSE*SSPIVMVKKSTGKYRFCLDFRKVNEVSKKYAYPLLNMTGILDKLRAAHYLSTLDLSQAYFQIPLEKSSREITAFTVPGKGLFHFVRMLYGLTGAPATFQRLLDKLIGPEMQPHAFAYLDDIIIVTETFEEHLHWLRIVFRKITTAGLTINPEKCEFCRSEVRYLGFIVGKEGLRIDPEKVAPVLEYPVPKNIKQLRRFLGMGSWYRRFIPHFATITEPLTRLLHLDEWKLVDLDEWKLVIPQDQRPEIYREAHDQPQAGHLGVEKTYDRVAIRYYWPGMYKDIAEYVRRCTVCQRTKVEQLAPAGLMGYRIAEKPWWDIIAADIMGPFPRSLSGFINYFIINIKMPPVKGCFRNYTEEAMKRAIEDVRLHKTPIRAAARKFGVPRITLKYKVEGKSPMERKMGPPPVLNQTEENEIRQWIEKMALAGFPMPPVKGCFRNYTEEAMKRAIEDVRLHKTPIRAAARKFGVPRITLKYKVEGKSPMERKMGPPPVLNQTEENEIRQWIEKMALADVKRENPFKIDRPGNSWIKGFFSRHPTVSKRVAQNLTISQAAVTSDKIFNWFSEVYGYLKKNDVDTILDDPSRIFNCDETAFFLNPKGNKVLTKKGCKTVYQQINPDEKECLTALLTGSASGVVAPTVVLYKYKRIPQEIAINFPQKWGLGKTDSGWMTCEAFFEFVADIFYPWLVASKITLPVILFMDGHASHLSLQTSQFYDKNVNIPVQEQQIQTETVEKHLSREEYLKQGLRFLNENIETEKINAFRCSSEEWTGNPQDTSLFLLWKGLQNEFEEYSTPGEEFVHHNVNPRALPFDNNTQVRDLVNMDNNEPVSVFDITIPDEESVYDNIIPAVPIQESHNNINQQPTDDNTNTSLLIDNANRTVGQSSNNDTSQAVLLEDSITTEDPVLLENLTTLHVSPIASTSNNIPSPFKRHFYCPRVEYKKTHKKRIPKEKMRFIASGELCQQYFLNKIKKKEEMKRLKEERVAERKRKREEKEKAKNNTTRQLKLKRAKNVLKYSSESSNSS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -