Basic Information

Insect: Megachile leachella
Gene Symbol: YY1
Assembly: GCA_963576845.1
Location: OY756248.1:9415538-9418258[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 4 0.00016 0.024 16.0 3.1 3 23 248 270 246 270 0.95

2 4 7.8e-07 0.00012 23.3 0.5 1 23 275 297 275 297 0.97

3 4 2.4e-05 0.0036 18.6 0.9 1 23 303 327 303 327 0.98

4 4 8.9e-07 0.00013 23.1 0.4 1 23 333 357 333 357 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	4	0.00016	0.024	16.0	3.1	3	23	248	270	246	270	0.95
2	4	7.8e-07	0.00012	23.3	0.5	1	23	275	297	275	297	0.97
3	4	2.4e-05	0.0036	18.6	0.9	1	23	303	327	303	327	0.98
4	4	8.9e-07	0.00013	23.1	0.4	1	23	333	357	333	357	0.98

Sequence Information

Coding Sequence: ATGGCGTCTTCGGAGATTAATATGGCGTCCTCGGACATAATAACCGAAGTGGAGATTCAACCAGATATCCAAGAGGTTGAAATAGAAACGATACCGGTAGAAATACCCTGTGAGACCGTGGAAACTACTATCGAGGGAGAAGATGGACAACCGATGATAGCTCTTCAAACGCTTCCAGAACCAGGACGCGAAGAAATCATACTACAGACGCAAGAGGAAATTGTCGGCAGTGATCCGTTGAGCGTGTACGATCAGATCCCGGTACCAGAGAACGATATTTATGTCGAGTCAAGTCCTGGCCCATCAAGAAAGGGTCCCAAGAAGGCCAGAAAGAGTGGTTCGTCGAAATTCAGAACGTCCGATCATACGATTTTTGGGGAGATGGGCTCGGAAACGAAGGCTAGAAAGTGGGAGCAGAAGCAAGTGCAAATCAAGACGCTCGAAGGTGAATTCTCGGTGACGATGTGGGCATCGGGCACCGATGACGGGAGTGTCCTATTAGCTCCTCACCTGGTGGATGTTCCAGATGAAGGCTCAAATCCAGAGCCTGATCCAGACTACACAGAATATATGACTGGTAAATCCAATGCCAAATTCAATCACTCTGGAAGCTCCATTTCTGATGGAATGCCAGGTCTTGACCTTTCGGATCCAAAACAATTGGCAGAATTTGCTAGACCTGGTCACAAATTGAAAGTACGCAAGCCTCCTGTTTTAGACGGCGTTGAACGCACTATAGCTTGTCCGCATAAAGGATGCACAAAAATGTTTAGAGATAACAGTGCAATGCGTAAACATTTGCACACTCATGGACCAAGAGTACACGTATGTGCAGAGTGTGGAAAAGCTTTTGTTGAAAGCTCAAAATTGAAAAGGCACCAGTTGGTTCATACGGGAGAAAAACCTTTTCAATGTACATTTGAAGGATGTGGCAAAAGGTTTAGCCTTGACTTTAATCTTCGTACTCATGTTAGAATTCATACTGGAGATAGACCTTATGTTTGTCCATTTGACGGATGCAGCAAAAAGTTTGCACAATCAACGAATTTAAAATCACACATATTAACACATGCAAAAgctaaGTCACGTAATGCGATTGGAAGACAAGTACAACAAATTCAACTGCAACAACCTCAATTTGTTCAAGTTGAAGTTGCAGATGTGGATAATCAACAGTTTATTGTTTATGCTGATTAG
Protein Sequence: MASSEINMASSDIITEVEIQPDIQEVEIETIPVEIPCETVETTIEGEDGQPMIALQTLPEPGREEIILQTQEEIVGSDPLSVYDQIPVPENDIYVESSPGPSRKGPKKARKSGSSKFRTSDHTIFGEMGSETKARKWEQKQVQIKTLEGEFSVTMWASGTDDGSVLLAPHLVDVPDEGSNPEPDPDYTEYMTGKSNAKFNHSGSSISDGMPGLDLSDPKQLAEFARPGHKLKVRKPPVLDGVERTIACPHKGCTKMFRDNSAMRKHLHTHGPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCSKKFAQSTNLKSHILTHAKAKSRNAIGRQVQQIQLQQPQFVQVEVADVDNQQFIVYAD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00393832;
90% Identity: iTF_01493869;
80% Identity: iTF_00963428;