Basic Information

Insect: Megachile leachella
Gene Symbol: Scrt1
Assembly: GCA_963576845.1
Location: OY756247.1:26697451-26703199[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 5 1.9e-06 0.00028 22.1 2.9 1 23 445 467 445 467 0.98

2 5 0.025 3.8 9.1 0.2 2 23 477 498 476 498 0.94

3 5 1.2e-06 0.00018 22.7 0.4 1 23 502 524 502 524 0.97

4 5 4e-08 6e-06 27.3 0.6 3 23 532 552 530 552 0.98

5 5 1.5e-05 0.0022 19.3 3.1 1 21 558 578 558 579 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	5	1.9e-06	0.00028	22.1	2.9	1	23	445	467	445	467	0.98
2	5	0.025	3.8	9.1	0.2	2	23	477	498	476	498	0.94
3	5	1.2e-06	0.00018	22.7	0.4	1	23	502	524	502	524	0.97
4	5	4e-08	6e-06	27.3	0.6	3	23	532	552	530	552	0.98
5	5	1.5e-05	0.0022	19.3	3.1	1	21	558	578	558	579	0.95

Sequence Information

Coding Sequence: ATGCCGCGCTGTTACATGGTGAAGAAGGCCCTGTGCAACAAGTATATAAGCAGCGTTGCCAGAGGATTCGAAAGCTGGGGTCGTGGAAGGAGCACGCCATCGCCAACCACCATGCAGATACCGGTCTCGCCCATAGAAGGGAGCGTTGCACCCCCTGTTGCTCAAGAGTACCTAAGCACGCAATCTCAGGACACGAGAGCAACGACAGGAACGAAGACCCTCGAGCAGGAGGTTTCTAGGGAGAGGCTGAACGAGCCCAGCGACGCTAACGCGACATCGCCGAATGCAACGAGCAACGGCACCATCTTCGCGACGGAACCTCCAGCAACGGCGTGGACGGAGACGACGACGGTGATCACCTGCACCACTGGCTCGTCCTCGATAATCATCCCACCTGCAACGGAATCCAGCACCGAGAGTACGATGGTGACGTCCACGTTCGCGTCTCCCAGATCACCGTCCAGACCAGTTACGGAGCAGCAAATGAGCGTGCTTCATCATCTGCCACCCGGAGAGCCATCTCCTCCTTCGAGTACCGCTACACCGTATCACCTGGAAGAAACCACGAATCATTCGACGTCCGAGTCGAGGATAGGGTCCGATTGTAATGTAGTGGTTACCAATTACGTGTCGTCGATGTTCAAGGACCGTTCTGCGGCCGAGACAGAAGCTGCCCACGATCTGTTAGAGTTGTCCAGGTCTCTGCCACCCTTACCACCGCCCAGTGTTGCCATCGGACCACAAAGCGTCGTGGAGACACCCGCGACCGATATTCAAGAGATGACGGTCTACCAACCAGACCAACCGATCTACCAAGTGAACACCATCGACCTCGCCAGCTCTACCGTGTACACCCATCATCAGCAACAGCAACCACCCACCGCGAGCATCATCTACGAGCCCAGCGCGACGATAGTTCAGCAAACGGGCAGCGTGTTCATCCCCCTGTCGCCGGTGCAGGAGATCCTGCTGACCTACAGCACACCGTCCATCCCGTGCACGCCGATCGTTGCCCAGCAACCGCCGCAACCGCCACCGCTGCAGAAACAGCCGCTTCAGCAACACCAGCCCATCGAGACTGCGCCACCCCTCACGCCCCCTACCTCCGAGTGCAGCAGCGACATCGAGAATAACAATCCCAACTCGCAGCCCAGCCAGAAGGACAAAGAAGTGCAGACAGTGATCGAGCAGACCGAAGTAAAGCCAGCCAGTTACACCTATGATACCCTCTTGGTGGCCGATGGGAGGTCGAAGAACAAGAAGATCGCGCCCAGTCAGAAGAACCAGGAGACCGAACCGATCGAGGCACCGGAGACCTCGAAGATCGGGCGATACGTCTGCTGCGAGTGCGGCAAGCAGTACGCAACATCGTCGAACTTGTCGCGGCATAAGCAGACGCACCGCAGCATCGATTCACAGTCCGCAAAAAAGTGCATCCATTGTGGTAAGGCGTACGTGAGTATGCCAGCACTGGCGATGCACGTGTTGACACACAAGCTGACGCACAGTTGCGGAGTCTGCGGTAAGATGTTCTCCAGGCCTTGGTTGCTGCAAGGTCATCTAAGAAGTCACACCGGGGAGAAGCCttacggatgcgcacactgcGGTAAGGCGTTCGCTGATCGCTCGAATCTTCGCGCCCACATGCAGACACACTCGGCGGATAAGAACTACGAATGTCACAAATGTCATAAGTCGTTCGCGCTCAAATCATACCTGAACAAACACCTGGAATCTGCCTGCCAGAGGGAGAACGACGAGAGCAGCAACGACGTCGATGCGCCGCAGTAA
Protein Sequence: MPRCYMVKKALCNKYISSVARGFESWGRGRSTPSPTTMQIPVSPIEGSVAPPVAQEYLSTQSQDTRATTGTKTLEQEVSRERLNEPSDANATSPNATSNGTIFATEPPATAWTETTTVITCTTGSSSIIIPPATESSTESTMVTSTFASPRSPSRPVTEQQMSVLHHLPPGEPSPPSSTATPYHLEETTNHSTSESRIGSDCNVVVTNYVSSMFKDRSAAETEAAHDLLELSRSLPPLPPPSVAIGPQSVVETPATDIQEMTVYQPDQPIYQVNTIDLASSTVYTHHQQQQPPTASIIYEPSATIVQQTGSVFIPLSPVQEILLTYSTPSIPCTPIVAQQPPQPPPLQKQPLQQHQPIETAPPLTPPTSECSSDIENNNPNSQPSQKDKEVQTVIEQTEVKPASYTYDTLLVADGRSKNKKIAPSQKNQETEPIEAPETSKIGRYVCCECGKQYATSSNLSRHKQTHRSIDSQSAKKCIHCGKAYVSMPALAMHVLTHKLTHSCGVCGKMFSRPWLLQGHLRSHTGEKPYGCAHCGKAFADRSNLRAHMQTHSADKNYECHKCHKSFALKSYLNKHLESACQRENDESSNDVDAPQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00684975;
90% Identity: iTF_00964678; iTF_00963408; iTF_00962042; iTF_01122663;
80% Identity: -