Basic Information

Insect: Megachile lagopoda
Gene Symbol: -
Assembly: GCA_036983795.1
Location: CM072798.1:13050742-13053462[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.017 1.9 9.6 0.2 3 21 8 27 6 28 0.85

2 14 1.7 2e+02 3.3 0.0 2 20 34 52 33 54 0.90

3 14 0.9 1e+02 4.2 0.4 1 12 237 248 237 257 0.89

4 14 0.013 1.5 10.0 3.1 1 23 367 389 367 389 0.97

5 14 0.00022 0.025 15.6 0.2 2 23 393 414 393 414 0.97

6 14 0.0011 0.13 13.4 4.9 1 23 425 447 425 447 0.97

7 14 0.034 3.9 8.7 0.1 1 23 466 487 466 487 0.76

8 14 0.00064 0.074 14.1 0.1 2 23 493 514 492 514 0.95

9 14 4.6e-05 0.0054 17.7 4.8 1 23 541 563 541 563 0.99

10 14 2e-06 0.00023 22.0 3.7 1 23 569 591 569 591 0.96

11 14 0.0011 0.12 13.4 3.9 3 23 599 619 597 619 0.97

12 14 1.4e-06 0.00016 22.5 0.8 1 23 625 647 625 647 0.98

13 14 8.9e-05 0.01 16.8 0.2 1 23 651 673 651 673 0.99

14 14 0.00038 0.044 14.8 0.2 1 23 681 703 681 703 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.017	1.9	9.6	0.2	3	21	8	27	6	28	0.85
2	14	1.7	2e+02	3.3	0.0	2	20	34	52	33	54	0.90
3	14	0.9	1e+02	4.2	0.4	1	12	237	248	237	257	0.89
4	14	0.013	1.5	10.0	3.1	1	23	367	389	367	389	0.97
5	14	0.00022	0.025	15.6	0.2	2	23	393	414	393	414	0.97
6	14	0.0011	0.13	13.4	4.9	1	23	425	447	425	447	0.97
7	14	0.034	3.9	8.7	0.1	1	23	466	487	466	487	0.76
8	14	0.00064	0.074	14.1	0.1	2	23	493	514	492	514	0.95
9	14	4.6e-05	0.0054	17.7	4.8	1	23	541	563	541	563	0.99
10	14	2e-06	0.00023	22.0	3.7	1	23	569	591	569	591	0.96
11	14	0.0011	0.12	13.4	3.9	3	23	599	619	597	619	0.97
12	14	1.4e-06	0.00016	22.5	0.8	1	23	625	647	625	647	0.98
13	14	8.9e-05	0.01	16.8	0.2	1	23	651	673	651	673	0.99
14	14	0.00038	0.044	14.8	0.2	1	23	681	703	681	703	0.97

Sequence Information

Coding Sequence: ATGGGATCGTTGAACCTCGTTTGCCCAATGTGTTGTGGCGAAACGTTTAATAATCCACAGTCGTTAAAGTACCATTTATTAAGCATGACGGACAACCTTTACTGTCCTGGTTGTTCGCAGCGATCCGACTCGGTAATGGCACTTATTCAGCATTTGGATCGGTGTGGACAGAACACTGAATTGGATGAGATGTGTGAGACTAAGCATGAACCCGAGCGAGAGACTCAGCATGAATCTGAACCGGACACAGAGGTGCTAATGgataCAAATGTTGAAGGAATAGATCAAAGCTTCTTGGCGACAGTAAATGATAGTGGAATCATGATAGTTGGTGGACCTCAAACTATACAAGTTGATGAAAATGGAGAGATCAAAGTCGTAGAAAAAATGGAAACTGAAGAGGTTGAAATGGAGCAAAATTCTTTGGAGTTTAAGATGACGGAAAAAGTTCCTATTACAACTGCTACTAAGGAAGTGAAAGAAAAGTCTTTATCCCAGGACCAACTAGTGACAATTTCTGCATCAAAAACAGATGATAAAagcaaaaacaaaaatatgattaCTATTTTACCTGACGGCTCCGAACTTCTTGATGGAGATACTGAAGCTCTGATAAATATGGATCATATAAATGATGTAGGTGAACTAGATGAGGATGGATTACTACATGTTAAGCAAGAGCTTTGTGAGATTGAACCAGAAGCAGTTTATAGTTGCACTAGTTGTGACATGAGTTTTAATTCTGTTGTGGAACATATTAAACAGTTTCACGATGGACAAGAAGTACTACTTGAAATAGCTGATCAATTAGATGATATACCAACAGTACCTGCAGCTAGTACCTTACCTTCAGAGTCAGGAAGTATGACAAATACTCGGCAGAGACAAAGTATGAATACGCTTCGTACCGAGGAGTGCGTAGACAGTGAGGGAAGATTATATACAAGAAAAGTAGTACAAATAGAAAGGTTCTGGGATAGAACTCCAGCTCAAACATCGAATCAATCAACCAAGGCACcaatgattgaaaaatttttttccaATGTGGAAGGAGTAAAAGTACGTGAAAAGAGATTGGAAGCCACTCCAGTAAGAACGTATAGATGCAACCAGTGCCTTCaacaattctccaaattagGAAACTTTCGAGTCCACGCGTGTCTTCATGGCAATAATCGTTGTGATAGTTGTGATCAAACGTTTGCAACGCCTAAAGCATTACAATTGCACGCTAAAGTACATGAAGGTGAACCTGATCCGAATCAAAAAACCTTTATTTGTGAAACTTGTGGCACAGAATTTTGTTCGCATAAAAGTTTGCGTTTACATTCTCGAATGCATGCTCCCGTCAGAGCAAGACATGTCGATGCTCCCGAAGGAACAGCTAGTGCAACATTTACGTGTCCCGAGTGTGGTAAAACATTAGCAGAATCATACAAAGAAGCACACATGGCATTGCACTCTGGTGATTCTGTAACTTGTACAGTTtgcaatagaaaatttgattctgCTGATAGTTTAGCAATGCATGCTGCAGTACACACGGAACTTAGTCAGCCACATTCACCGACACCACCTGCAGTAGAAACTACAACTGAACCCAcagaaaatcaaaaaccgTATCAATGTCAACACTGTGGTCGAAGATTTACAAGACCTCACGAGAAAGTGAAACACGAGCGTATCCACACCGGAGAAAAACCACACGCTTGCGaaGTTTGCGGCAAAACGTTTCGCGTCTCTTATTGTTTAACGTTGCATATGAGAACTCATACTGGCGTAAGACCATATGGATGTCAACATTGTGGTAAAAGATTTAAAGCTTCTTCCGTTTATAATCATCACTTGCTTACGCATGGAGAAGAACGTGCTTATACATGTCCATATTGTCCAAAAACGTTTAAAACGCGTGTTCAACTTGCGGGACACAAGAACAGTCATACTAAACCGTTTCGTTGCACCGAGTGTTCCCGACCATTTGCTTCTTTGTATGCTGCGCGTGCTCATATACAAACTCATAAAAAAGACAACAATTTGAAGTTCAGTTGTTATATATGCGGTGCATCATATGGTAGAGCATTCGCGTTAAAAGACCACCTAAAACAGCACGGTCAAGATGTGCTGACTCCACCAGAACCAGcaagagaagaagaaattcATGAGGGAGAAGAGTTTTTACTCGCGGAAGAAGAAGTAGAAGACGACGAGTTGGTTATACCGTCACCTTTACCCGTTGCACAGTCTTCAGAAGCTGACGATACAGAATGA
Protein Sequence: MGSLNLVCPMCCGETFNNPQSLKYHLLSMTDNLYCPGCSQRSDSVMALIQHLDRCGQNTELDEMCETKHEPERETQHESEPDTEVLMDTNVEGIDQSFLATVNDSGIMIVGGPQTIQVDENGEIKVVEKMETEEVEMEQNSLEFKMTEKVPITTATKEVKEKSLSQDQLVTISASKTDDKSKNKNMITILPDGSELLDGDTEALINMDHINDVGELDEDGLLHVKQELCEIEPEAVYSCTSCDMSFNSVVEHIKQFHDGQEVLLEIADQLDDIPTVPAASTLPSESGSMTNTRQRQSMNTLRTEECVDSEGRLYTRKVVQIERFWDRTPAQTSNQSTKAPMIEKFFSNVEGVKVREKRLEATPVRTYRCNQCLQQFSKLGNFRVHACLHGNNRCDSCDQTFATPKALQLHAKVHEGEPDPNQKTFICETCGTEFCSHKSLRLHSRMHAPVRARHVDAPEGTASATFTCPECGKTLAESYKEAHMALHSGDSVTCTVCNRKFDSADSLAMHAAVHTELSQPHSPTPPAVETTTEPTENQKPYQCQHCGRRFTRPHEKVKHERIHTGEKPHACEVCGKTFRVSYCLTLHMRTHTGVRPYGCQHCGKRFKASSVYNHHLLTHGEERAYTCPYCPKTFKTRVQLAGHKNSHTKPFRCTECSRPFASLYAARAHIQTHKKDNNLKFSCYICGASYGRAFALKDHLKQHGQDVLTPPEPAREEEIHEGEEFLLAEEEVEDDELVIPSPLPVAQSSEADDTE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00625657;
90% Identity: iTF_00226756;
80% Identity: -