Basic Information

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 2 3.7e-11 7.7e-08 32.5 0.0 3 40 14 51 12 56 0.88

2 2 4 8.2e+03 -2.8 0.1 30 45 124 139 124 139 0.84

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	2	3.7e-11	7.7e-08	32.5	0.0	3	40	14	51	12	56	0.88
2	2	4	8.2e+03	-2.8	0.1	30	45	124	139	124	139	0.84

Coding Sequence: ATGCCTCATATCAAGGGtgcttttagaaattattctgTAGAAGCGATGAAGGCAGCGATTGAAGATGTTAAGTTACGCAAAATGTCTATAAGAACAGCAGCACGAAAATTCGACGTGCCAAGAATAACTCTAAAATATAAGGTAGAAGGTAAGTCACCTATAGAAAGAAACATGGGACCTCCtccaattttaaacaaaatagaGGAGAATGAAATATCTCAATGGGTTGAAAAAATGGCTGCTGCGGGTTTTCCAATAACACCTGTTGAACTTATAACCAGTGTCCAGCGCTTCATAAAAGAAGCGAAACGTCCAAATCCATTTAAAAATCGCCCTGGGAAAACGTGGCTAAAGgcatttttacgaaaaaacTCTACGGTATCAAGAAGGATTTCTCAAAACCTGACAGTTTCACGAGCATCGATCACTAATACCGAAGTACAGAACTGGTTTTCTGGAGtttatgattatttaaaagaacacAGTTTTGAAAAGATTTTATATGACCCATCTCGCATTTTTAACTGTGACGAAACAGCGTTTCTCCTAAATCCAAAGGGTAATAAAGTATTAGCGAACAAAGGAGCTAAAACTGTTTATCAGCAAGTGAATGCTGATGAAAAAGAATGTATAACAGCGTTATTAACATGCAGTGCCAGTGGTTTAGTTGCACCTACGACAGTATTATTCAAATACACACGCACACCACAAGAAATTgttcacaattttccaaaagaaTGGGGTTTAGGCAAAAACGTTTCGGGTTGGATGACCTGTGAggcattttttgaatttattgccAATATATTCCACCCATGGTTAATAAAGGTCAAAGTTATTTCCGCATTTAAGTTTGCAAACAAGCCAATTTTGtga
Protein Sequence: MPHIKGAFRNYSVEAMKAAIEDVKLRKMSIRTAARKFDVPRITLKYKVEGKSPIERNMGPPPILNKIEENEISQWVEKMAAAGFPITPVELITSVQRFIKEAKRPNPFKNRPGKTWLKAFLRKNSTVSRRISQNLTVSRASITNTEVQNWFSGVYDYLKEHSFEKILYDPSRIFNCDETAFLLNPKGNKVLANKGAKTVYQQVNADEKECITALLTCSASGLVAPTTVLFKYTRTPQEIVHNFPKEWGLGKNVSGWMTCEAFFEFIANIFHPWLIKVKVISAFKFANKPIL

Sequence clustering based on sequence similarity using MMseqs2