Basic Information

Insect: Mecyna flavalis
Gene Symbol: F52C9.6
Assembly: GCA_949319885.1
Location: OX439422.1:4398464-4406697[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 5 0.00043 0.038 15.4 0.7 5 23 957 975 955 975 0.97

2 5 0.0016 0.14 13.5 2.3 1 23 980 1002 980 1002 0.97

3 5 1e-05 0.0009 20.5 0.3 1 23 1008 1031 1008 1031 0.98

4 5 1.4e-05 0.0012 20.0 1.0 1 23 1037 1059 1037 1059 0.97

5 5 0.0038 0.33 12.4 8.1 1 23 1065 1088 1065 1088 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	5	0.00043	0.038	15.4	0.7	5	23	957	975	955	975	0.97
2	5	0.0016	0.14	13.5	2.3	1	23	980	1002	980	1002	0.97
3	5	1e-05	0.0009	20.5	0.3	1	23	1008	1031	1008	1031	0.98
4	5	1.4e-05	0.0012	20.0	1.0	1	23	1037	1059	1037	1059	0.97
5	5	0.0038	0.33	12.4	8.1	1	23	1065	1088	1065	1088	0.96

Sequence Information

Coding Sequence: ATGACAAGCACACCGAAAAGATGGCCCTTAGTCCCCAGCGGCTCTGCCAGGCCGAACCAAGGCAGCGGTTACGGTAGCGGCAGAGCAAAGGGTGCAAAGAATCCCTGGGTTCGATCAGGCTGCCAAAACAAATTGACCCTGGCTACATATAACATACGGACTATGAGCACGCAAGCGAAATTAAAAGAACTCGAGACAGAACTGGAGCAGATCAAATGGGACATACTTGGACTGAGCGAAGTTCGCAGAAAGGGTGAAGACACAATACAGCTGGATAAGGGAGACTTGCTGTACTACAGAGGAGAGCAGACCACATCATACGGAGGAGTTGGATTTGCTATAAAAAGACACCTGAAGGCAAACATTATTGAGCTGGCAAGCATATCACCCAGAGTCGCCTACGTCATTATCAAAATCAATAAGAAATATGCTCTCAAGGTCATCCAAGTGTACGCACCAACAAGTACTCACAGCGATAGCGAGGTTGATCTCTTCTACGAGGAGGTAGAGCAAGCTATGAGCAGGGGCCAACGTTGCCAGTACCAAATAGTTATGGGAGACTTCAATGCGAGGGTTGGACAAAGACGTGACGACGAAACCAGTGTTGGACTCTTTGGAATCAATCAACGGAATGCTCGCGGTCAAACTCTCGTAAATTTTCTCGAAGCAAACAACCTATACGCAATGAACACCTTCTTCAAAAAGAAACTGAAGCGTAAATGGACTTGGGCCAGCCCAGACGGCAAAACGAGATCAGAGATTGACTTTATTCTGTCAAACAACAAACAAGCCATCCAGGACGTTTCAGTGCTGAATAGGTTCCAGTGCGGCAGCGACCACAGACTTGTACGAGCTACCATTGTTCTTAACACACGATTGGAGAGAGTGAAACTTGTCAGGAAGCCTATTGGGAAGCTGTGTATTCCAGAGGGTGTTAACGAGTTGTTCGAAAGATCTATCTGGAACAAACTACGGCGTAACGCTGTAGAACATTTTGAAGATAGCCTCCAggataaatatttcaaatttattCACACAGTTGGGAGCACCGCTAAACAACATTTTTCCAGAGCTACCAAGATTCGAGAACAAGTTTCGAACCAAGTGCTGGATCTTATGCGGCAGAGAAAAGACGTAGCCAACCACGACTTCAACAGTGAGGCACACCGCGAGCTAAATAAAAAGATCCATAAGTCACTTAGAAAAGACATTCGTGAAAGAAACACTAAACATATACAGCTACTTATAGAGAAAAACAAAGGTCTGAAAGTGTTCCAGCGGACAAATGCAGTAAACAACCTCAGCTCTCTAAAAGATGCTAATGGTGCGGTTACTAACAATGGCAAGGAAGTACGAAAAATTACAGAAGACTTCTATGGAGACTTGTACGCGTCTAGAGTTCCTAAAGCTGCTAACTTCGACCCAAGCGATAAGCGTTCCCGTCTAGTGCGACATTATACTGAGGACATACCGGAATTTAGCACATATGAGATCAAACAAGCTTTGAAACACCTGAAGAAACTCAAAGCACCTGGGGAAGATGGCATTACAGTGGAGCTTTTAAAGGCTGGTGGTAGTGCAATCACAAAAACGCTGAGGCTGCTTTTTAACGAAGTCTTATTCACTGGCGAGGTACCGAAAGACTGGACAAAGAGCATCGTTGTACTCTTCCATAAAAAAGGAGATAAGACGCAGTTAAAAAACTACCGCCCAATATCACTGCTCAGTCAGGTCTACAAGGTCTTCTCGAGAGTCCTCACAACACGACTCacgcaaaggctcgacgaataTCAGCCAAAAGAACAGGCGGGCTTTAGAAAGGGGTTTGGAACCATAGACCATATTTTTACATTACGCCAAATTATACAGAAGTCAGAGGAATATAATAGACCACTCTTTCTCGCGTATGTGGattatgaaaaagcctttgacacTGTGGAGCACTGGGCTGTGTTTCAATCGCTTAGAAGATGCCACATTGACGACCGCTATATTCAGATCCTGAAAAACTTATACAAGTCTGCAACCATGACGGTTCAGTTGAAGGAACATACGAATCCTATATCCTTGGCACGAGGAGTCCGACAAGGAGACGTGATATCACCCAAACTATTCACAAGTGCAATGGAAGACGTGGTCAAAACTCTGAGCTGGGATGGACTGGGAATAAACGTAGACGGAGCTCCCCTAAACCACTTGAGATACGCAGATGACATAGTGCTTATGGCTGAATCAAAGCAGGAACTCCAGCGAATGCTCACAGAGCTGTATCACGCGTCACTAGATATTGGGTTGAAAATGAACATggataaaaccaaaataatggCTACCTCGGATCTGTCCCCGCAACCCATTATTCTAGATGGCAAGCCACTAGAACAAGTTGACGAATACATATACCTTGGACAGCGCATCAGACTGGGTCGAGATAATATGAAGGCTGAGATCGACAGACGCATACAGCTGGGCTGGGCAGCCTTTGGGAAGATGAAAGCAGATGTCTGGACGTCAAAGCTGCCCCAGTCACTAAAGACCAAAGTGTACAATCAGTGTGTTCTCCCGGTTTTAACGTACGCTTGCGAGACTTGGCCCCTGACTGCGAGTTTGATCAACAAACTTAAAGTCACCCAGCGCAACATGGAACGCGCGATGCTCGGGCTGTCCCTGCGCGACAGAGTCCGTAACGAAGCCATCCGCCAGCGAACAAAAGTGGTAGACGTCGGCTATCGCATTGCAAAGCTGAAGTGGGCGTGGGCTGGACATATGTGGCGCCAGCAAGAAGACAGATGGAGCAAACGCGTTTTCTGTTGGAGACCTCGCTCCAAAAGACCAGTCGGCAGACCACCAGCGCGCTGGTCCGATGATTTAATCTGCGGTCAGAAGTTCACCCACCGCGGGTCTCTCAGCACTCACATCAGGTCGCACTTCCCGCCGATGTTCGCCTGCCAGCAGTGCAGCTACCGCGCCGCGCACAAGTACGACCTGACCAAGCACCAGCGGATACACgcagGCGAGCGTCCGTTCCAGTGCGACATGTGCCCGGCCACGTTCTACGACGCGTCCAACATGAACAGCCACATTCGCCGCAACCACCAGAAGCTCATGAACTTCAGATGCGAGACGTGCGGGCGCGGGTTCTATGACCGGTCAAAGCTGAATCGGCACGTTGATTCACACAACAACATCAAACGTCATTCGTGCACGCAATGCGGCTGCGCGTTCACCCGGCTGTCGTACCTGAAGACGCACCTGCACAAGCGGCACGGCATCCGCCTGCCGCCGCTGCGGCCCGGCCCGCAGCGCAAGAACCTCATCGTCGACATACCGCCGGTGGAGTATGTGAAACCGACTCTAATAGCTGTAAAACAAGACACTCCGTTGTGA
Protein Sequence: MTSTPKRWPLVPSGSARPNQGSGYGSGRAKGAKNPWVRSGCQNKLTLATYNIRTMSTQAKLKELETELEQIKWDILGLSEVRRKGEDTIQLDKGDLLYYRGEQTTSYGGVGFAIKRHLKANIIELASISPRVAYVIIKINKKYALKVIQVYAPTSTHSDSEVDLFYEEVEQAMSRGQRCQYQIVMGDFNARVGQRRDDETSVGLFGINQRNARGQTLVNFLEANNLYAMNTFFKKKLKRKWTWASPDGKTRSEIDFILSNNKQAIQDVSVLNRFQCGSDHRLVRATIVLNTRLERVKLVRKPIGKLCIPEGVNELFERSIWNKLRRNAVEHFEDSLQDKYFKFIHTVGSTAKQHFSRATKIREQVSNQVLDLMRQRKDVANHDFNSEAHRELNKKIHKSLRKDIRERNTKHIQLLIEKNKGLKVFQRTNAVNNLSSLKDANGAVTNNGKEVRKITEDFYGDLYASRVPKAANFDPSDKRSRLVRHYTEDIPEFSTYEIKQALKHLKKLKAPGEDGITVELLKAGGSAITKTLRLLFNEVLFTGEVPKDWTKSIVVLFHKKGDKTQLKNYRPISLLSQVYKVFSRVLTTRLTQRLDEYQPKEQAGFRKGFGTIDHIFTLRQIIQKSEEYNRPLFLAYVDYEKAFDTVEHWAVFQSLRRCHIDDRYIQILKNLYKSATMTVQLKEHTNPISLARGVRQGDVISPKLFTSAMEDVVKTLSWDGLGINVDGAPLNHLRYADDIVLMAESKQELQRMLTELYHASLDIGLKMNMDKTKIMATSDLSPQPIILDGKPLEQVDEYIYLGQRIRLGRDNMKAEIDRRIQLGWAAFGKMKADVWTSKLPQSLKTKVYNQCVLPVLTYACETWPLTASLINKLKVTQRNMERAMLGLSLRDRVRNEAIRQRTKVVDVGYRIAKLKWAWAGHMWRQQEDRWSKRVFCWRPRSKRPVGRPPARWSDDLICGQKFTHRGSLSTHIRSHFPPMFACQQCSYRAAHKYDLTKHQRIHAGERPFQCDMCPATFYDASNMNSHIRRNHQKLMNFRCETCGRGFYDRSKLNRHVDSHNNIKRHSCTQCGCAFTRLSYLKTHLHKRHGIRLPPLRPGPQRKNLIVDIPPVEYVKPTLIAVKQDTPL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -