Mfla002006.1
Basic Information
- Insect
- Mecyna flavalis
- Gene Symbol
- -
- Assembly
- GCA_949319885.1
- Location
- OX439409.1:3097563-3108636[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.00096 0.084 14.3 4.8 1 23 395 417 395 417 0.96 2 11 0.0057 0.51 11.8 0.1 2 23 425 447 424 447 0.95 3 11 0.0098 0.86 11.1 1.2 1 23 451 473 451 473 0.94 4 11 4.3 3.8e+02 2.8 0.1 1 23 478 503 478 503 0.92 5 11 0.8 70 5.1 2.4 1 23 507 530 507 530 0.91 6 11 0.8 71 5.1 0.4 1 22 541 562 541 566 0.91 7 11 0.00011 0.0097 17.2 0.8 2 23 581 603 580 603 0.96 8 11 0.00019 0.017 16.5 0.3 2 23 657 678 656 678 0.97 9 11 0.0006 0.053 14.9 0.7 1 23 684 706 684 706 0.97 10 11 0.00016 0.014 16.7 1.1 1 23 712 734 712 734 0.98 11 11 0.00025 0.022 16.1 4.1 1 23 740 763 740 763 0.96
Sequence Information
- Coding Sequence
- atggTGGCCACCTGCTGTGTAAGAGGCTGTAAGAACAAGAGAACTGCTAAAAAGGTGCTGACTGGAACATTATCATTTCATTCgTTCCCATCAAAGTCATCAAACCCCGATCTTCGGCAAAAGTGGCTGCAAGCCATAGGTCGGCCGGACTGGGATCCCCCCAGCCACACTCGCATCTGCAGTGCTCATTTCAGTGTCGATCAAATAAATCAAGATGGATTCAGGATCCGAATCAAGGATGATGCAATTCCAGTCAACGCATTACCGCCAAACTCTTTCTTTGAGGCATCACATTTGGAAGTGTGTAGGATTTGCCTGGCCACTGATGTCAAGATGTTCAGCCTCCAAGAAGGAATACTCAAAATCTGTAAGGAGACTCTTGGTGGATGCATGGATAATAAATGGAATATCGAAGGCCTGCCACAATTTGTCTGCTACATATGTGGAGCACAGCTACTAAAGAGTTACAAGTTGATTGAGAAAAGCGTGATTGCACAGGCAactttacttgatatttttgCAGAAAATTCACTtataacCAAAGATCTGGTAAAGCAAAGAAATAGAAAGCAATTAAATTTGGCGTTTTCATTCGGCGTCACACAACCTGTCACTGACTTAGTTTGTAAGCACAATTACGAAAAAGATGAAGATTTAAATGAGGATGCTGATCTCAAAGATAACATTAAAATtgatttgtatttcaaaaacaGTAAAGAAATTCTTCAAGAAGATTCTAATATGCCTGAGGAAAGAAAGACGAAGAGTGttgcttcaaataaaaatacaggcAAACCAAAACATCTTAGTGATAATGAAGAAAAAGTTTACACTCATAACTATACTGCAGTAATTGTAGAACCTATTATCGAAGGCGAAGGTGATTCAAAACACTTTCCGATTGTAAATGATGTGCAAATGGTTGATACATTAAAGacagaaaatgatgatgattccgATGATAATGATGTTAAAATGGATTATTCTGATAATGAAGATTTAGCTGAAACAAAGAACTTCAgctgtaaaattgaaaatactGAGTATTGTGACGTGGAAAAGATAAACTCCGACGCTGAATGTTTTAATAAGTCGAgtctaaataaaaagaaaataaatTTACAGGAACAAATAAATGAGTGGAAAAAGGAAATTGGAAACGAGGTTCGACCAACTTGGACGTTTATATGCAAAGTTTGCTCAAAAAAATTTCCTAGGAAAAAAACTTATGAAAAACATCTATCCCATCATAACCTGAGCCGTGGCGATAAGGTGTGTCCGGTGTGCCAAGAGCGTTTTATAAGCGAAGTACGGCTCAAGGCGCACACAATTCGCGTTCACTCTAAAAGATATGAGTGTAAGGAATGTCCTAAAGTATTCcataatatGCTCTCGGCGCGTCGGCACTGGGAGTACCACTCGGGCGACGTGTACCGCTGCGGGGTCGGCGATTGCTCGTACAGCACGCGACTGCGCTCGGTCGTGTGGGTGCATCGCCAGCAGGAGCACGCGAGCGACCACCACTGCCTGCGCTGCGGCCGCTGCTTCCTCAGCGCTAAGGGCCTCGCCACGCACGCCGCCATGGCACACCTTGACACGGAAGAGGAACCAAAGGAAACATTCCCTTGTGAAGAGTGCGACCTATTATTCCATTCGGAAGGAGCACGACGCATCCACATTCTCACATACAAGAAGCATAGGATTCAAAAGAATGCAGAACATCCGGAAGAGTTCAACACGACTTGCCGAAACTGTGGGAAGGTGTTCAATACCCGGATGGAGTTGGTCGCGCACAAGAACAAAGAGCATCCCGGAATGATATACAAGCATAAAAAGAAGAAGTACCTTGGGAGACCCTACCCACGCAACTGTGAATATTGTAACAAAGAGATGGCAAGCCGGCGCGAACACTACTGGCATGTTAGGCGAGCCCACAAGCAGGAGAAGTACCATCCCGACGCGTTCATCGTCTGCGAACAGTGCGGGAAAGGATTCCAGAACGTCAGCCTGTTCCGGTACCACATGTTGAAGCACGCCGGCGCGCCCGCGTTCGCGTGCGAGTCCTGCCCGCGGCGCTTCTACCACCGCGCGGAACTCGGCCGTCACGCGCGCGTGCACTCGGCGGAGCGGCCGTACGCCTGCCCCGACTGCCCGCGCGCTTTCCTCTCGCGACACAACTACCTGCGCCACAGGCGGaTACATACGGGAGAGACTCCATACGAATGCTCAGAATGTAATAAGAAATTCAAGTATTGGGAAACGTTGCATCTGCACGTCAAACACGTGCATCAGAAGATCCCCTGGCCAACGCGCGCCAGGCGAGGAACCAAGACCAAGAAGCAAACTAAGCATGAAACGCACGATGAAACTGACGGTTCTGAATAA
- Protein Sequence
- MVATCCVRGCKNKRTAKKVLTGTLSFHSFPSKSSNPDLRQKWLQAIGRPDWDPPSHTRICSAHFSVDQINQDGFRIRIKDDAIPVNALPPNSFFEASHLEVCRICLATDVKMFSLQEGILKICKETLGGCMDNKWNIEGLPQFVCYICGAQLLKSYKLIEKSVIAQATLLDIFAENSLITKDLVKQRNRKQLNLAFSFGVTQPVTDLVCKHNYEKDEDLNEDADLKDNIKIDLYFKNSKEILQEDSNMPEERKTKSVASNKNTGKPKHLSDNEEKVYTHNYTAVIVEPIIEGEGDSKHFPIVNDVQMVDTLKTENDDDSDDNDVKMDYSDNEDLAETKNFSCKIENTEYCDVEKINSDAECFNKSSLNKKKINLQEQINEWKKEIGNEVRPTWTFICKVCSKKFPRKKTYEKHLSHHNLSRGDKVCPVCQERFISEVRLKAHTIRVHSKRYECKECPKVFHNMLSARRHWEYHSGDVYRCGVGDCSYSTRLRSVVWVHRQQEHASDHHCLRCGRCFLSAKGLATHAAMAHLDTEEEPKETFPCEECDLLFHSEGARRIHILTYKKHRIQKNAEHPEEFNTTCRNCGKVFNTRMELVAHKNKEHPGMIYKHKKKKYLGRPYPRNCEYCNKEMASRREHYWHVRRAHKQEKYHPDAFIVCEQCGKGFQNVSLFRYHMLKHAGAPAFACESCPRRFYHRAELGRHARVHSAERPYACPDCPRAFLSRHNYLRHRRIHTGETPYECSECNKKFKYWETLHLHVKHVHQKIPWPTRARRGTKTKKQTKHETHDETDGSE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00960991;
- 90% Identity
- iTF_00960991;
- 80% Identity
- iTF_00960991;