Mfla010351.1
Basic Information
- Insect
- Mecyna flavalis
- Gene Symbol
- -
- Assembly
- GCA_949319885.1
- Location
- OX439418.1:10675349-10681389[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.0024 0.22 13.0 0.2 2 23 216 237 215 237 0.95 2 13 0.0011 0.096 14.1 5.1 1 23 243 265 243 265 0.98 3 13 1.5 1.3e+02 4.2 0.6 1 23 278 300 278 300 0.92 4 13 8.8 7.7e+02 1.8 0.4 8 20 384 396 371 398 0.81 5 13 0.0015 0.13 13.7 4.1 1 23 568 590 568 590 0.98 6 13 0.0011 0.093 14.1 4.2 2 23 596 618 595 618 0.96 7 13 7.4e-05 0.0065 17.8 0.6 2 23 627 648 626 648 0.97 8 13 0.15 14 7.3 5.5 2 23 652 673 651 673 0.96 9 13 0.067 5.9 8.4 1.4 2 23 687 709 686 709 0.96 10 13 0.00028 0.025 15.9 3.7 1 23 715 737 715 737 0.98 11 13 0.0078 0.69 11.4 3.9 3 23 745 765 744 765 0.97 12 13 0.001 0.089 14.2 0.4 1 23 771 794 771 794 0.95 13 13 0.002 0.18 13.2 3.6 1 23 798 821 798 821 0.97
Sequence Information
- Coding Sequence
- ATGGAGCCAAACGATATTTCCGAATTTTTAAATGCTCGTTCTGGTAATGGTTTGAATAATGTTCCAAGAATTTTGGGCAAGTCAGCTCGAATTGCCAATGATATTAAAGATGATGTGAAAGGAGTGAAAAGAGATACTTTAACGACTAAGAATGCTGTGAAGTTTCTTCTTGAAGGAAGGCTTAAGAAGAAAGTGTGTCGGTATTGCTTGAACGTGGCATCGCCGTTATCTGAACTGGATCAGATTCTACAAATCGCCGGTACCGGTGCTTTATACAAAATCAGTATAAGGGACATGGTTGCTAGCTTCCATCCCTTCAAGGTTGCCGATGACCCCAACTTTCCAAACCGGATTTGCAATAAATGTTTGAACCGGACCATAAGTTCATATCTATTCACTCAGCAGTGCGAGCGGTCTGAACGTGCCTTACGAAACTGTTTCGAAGACATGTACAATAAGTTAGAAAAGTTAGACCCCTTAGAACCCAAACAGAAAAAGCGGGGGAGACAAAAAATAAATCCGAATTACAACATATTGTACACAGAACATGAAAAAGTTATTGATTATGCCGAACCAATAATTAATATAGTCAACAGTGGCTCAGAGTTACTAGATCAAGAAGAAAGTGATGGTGTAGAGAAGTTGGAATGCCTTAAATGCTGGAGAGTGTTCCCCAACATGTCCTCTTTGCTAAACCATGAGAAATTACACCCAAAAACGATGTACTACCATTGTCGTCAATGTGGCAAAGCTTTTACAAAACGAAATCAAATAAAGAAGCACAAGAAAATACATGAACTCGGAAAGCAGTTGGATATTGGGAAATCTGACTTTAAATGCCTTGAATGTGGTGTTGTAAGTAACGATTACAATGAACACTTGCAACATAttgaaaaacataaatttcaaaTGGTGATGGAACATCTAATTGAAAGGAATATGGACAAATTATGTACCGTTTGTTTTGATAAGAATAGACAGATGGTGGAATTGGATAAAATGGTTTGCCTGCATGGTGGTTATCCTGAACTGATGGGAGATAAAACGCTTTACAATATTCTTGGATCTACAGTGCCTGAAATGAATATTCTACATAACTACACGGGGACAAAAATATGTGAAAAGTGCCTTAACCACGCTATCACGTCATACGTTTTCATTCGGCAGACACAGTATATTAGACATAGATTGAATACTTGTATTAGTCATATGTTAGAAAATTTGAACAAAATTCAAACGCCAGAAGGTAATATCTTTGTTGAAATATCCCAAAACACAATTATGCCAGTTGTACCACAAGAGCTTGATTTAATTGACGAGGAAGATATTGATGAAAATAACCTCAAAGTTGACGTGTTAGAAGATGAGTTCAGATTAAAATCTGAAAGTGAAGAAAGCGAGTCTGACATGGAAATCAATATTAGGACTGAACAAAAGAAAGATATTGACGATATATTTGCTGCAGACTCGacaaaaagaaaagatttgtcAGATATTTTTGATAACACTGAACTATCAACAGAATCGGATGACATATTAGAAAATCCTGCAAGGAAAGCAATTAGGACatatgaaaatagaaatttGTTCAATGGCATTCATGGCATGCATAATGATAAAAAGTACAACTCGATGAATATTAGTGAATTTTTAacctttaaaaagaaaaaaaggccAATAAGGAGATTTTATAGTTGCAAATTCACGTGTCCGTTCTGTAGTAAACATTTTGTGTCGGACTATTTCTTGAAAAGACACGTTTTAAAGCATGTTTATAAAAAGATAGAATGCAATATATGTGAATGTGTATTCAAATCTAAGTTCTATCTTTATGAGCATATGaaaatgtgtcacattttaaagcagGACGATTATAAGTCTTGTAAAGTGTGTGGAAGGGCTTTTATTAGCCGTAACAAGTTGGATCGCCACATCGACACACACGTTACGAAAGAGTGTCAACTTTGTAACAAGACTTTCGTTTCTCAGTTACATTACAACTGTCATATGGAACGACATGCGGTCAAACTTAGATTACTAAAAAAGCGGCGAGCCCAAACCTGCAGTTTCTGTGAGAAAGAGTGTTCAAACGATAATGAACTCTCTGTACACGTGAACAAAGTTCATTTGCAGATAAAACCTTATAGTTGTGACATGTGCGAAAGACAATTTTACACAGAATCCAACTTGTGCAGTCACAAAAAAGTGCATAATCTATTCTCGAAGGAATCGTGTCAGTTTTGTGGCAAGACATTCAAATGTAGAAAAGATTTAGTTATTCATGTGAGAAAACATATCGGTGTTCAGCCTCATGCCTGCCCTATTTGCAACCAATCATTTTATTCTATTGGCAAGGTTAAAGCTCACATGTCAATCTACCATGGAGGCGCATTCTGTTGTAAACTTTGCAAGAACACATTTGGAACGAAATCTGGCCTTAAATATCACATCAACAGagctcataatattatttaa
- Protein Sequence
- MEPNDISEFLNARSGNGLNNVPRILGKSARIANDIKDDVKGVKRDTLTTKNAVKFLLEGRLKKKVCRYCLNVASPLSELDQILQIAGTGALYKISIRDMVASFHPFKVADDPNFPNRICNKCLNRTISSYLFTQQCERSERALRNCFEDMYNKLEKLDPLEPKQKKRGRQKINPNYNILYTEHEKVIDYAEPIINIVNSGSELLDQEESDGVEKLECLKCWRVFPNMSSLLNHEKLHPKTMYYHCRQCGKAFTKRNQIKKHKKIHELGKQLDIGKSDFKCLECGVVSNDYNEHLQHIEKHKFQMVMEHLIERNMDKLCTVCFDKNRQMVELDKMVCLHGGYPELMGDKTLYNILGSTVPEMNILHNYTGTKICEKCLNHAITSYVFIRQTQYIRHRLNTCISHMLENLNKIQTPEGNIFVEISQNTIMPVVPQELDLIDEEDIDENNLKVDVLEDEFRLKSESEESESDMEINIRTEQKKDIDDIFAADSTKRKDLSDIFDNTELSTESDDILENPARKAIRTYENRNLFNGIHGMHNDKKYNSMNISEFLTFKKKKRPIRRFYSCKFTCPFCSKHFVSDYFLKRHVLKHVYKKIECNICECVFKSKFYLYEHMKMCHILKQDDYKSCKVCGRAFISRNKLDRHIDTHVTKECQLCNKTFVSQLHYNCHMERHAVKLRLLKKRRAQTCSFCEKECSNDNELSVHVNKVHLQIKPYSCDMCERQFYTESNLCSHKKVHNLFSKESCQFCGKTFKCRKDLVIHVRKHIGVQPHACPICNQSFYSIGKVKAHMSIYHGGAFCCKLCKNTFGTKSGLKYHINRAHNII
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -