Mfla008739.1
Basic Information
- Insect
- Mecyna flavalis
- Gene Symbol
- -
- Assembly
- GCA_949319885.1
- Location
- OX439416.1:5862795-5878838[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.00035 0.031 15.6 4.7 1 23 291 313 291 313 0.98 2 13 0.071 6.3 8.4 3.5 1 23 321 344 321 344 0.94 3 13 7.3 6.4e+02 2.0 0.6 1 23 348 371 348 371 0.77 4 13 0.001 0.088 14.2 4.9 1 23 448 470 448 470 0.99 5 13 0.0041 0.36 12.3 1.1 2 23 479 501 478 501 0.96 6 13 1.1 94 4.7 5.7 1 23 505 527 505 527 0.97 7 13 0.0013 0.11 13.9 2.2 1 23 532 555 532 555 0.98 8 13 0.74 65 5.2 3.6 1 23 559 582 559 582 0.88 9 13 0.32 28 6.3 0.0 1 20 601 620 601 622 0.95 10 13 1.1 99 4.6 0.1 2 23 665 687 664 687 0.92 11 13 3.1e-06 0.00027 22.1 1.0 1 23 696 718 696 718 0.98 12 13 6.6e-05 0.0058 17.9 0.3 1 23 724 746 724 746 0.97 13 13 6e-06 0.00053 21.2 2.6 1 23 752 775 752 775 0.98
Sequence Information
- Coding Sequence
- ATGTGGGATATAAAAGCGTGCATCGTGTGCTTTAATACAGAAGTTAAGTTATTCAATCTTGATAGTGGTGCACTGCGGCGTCAATTCAACGACATTGCAGGACTAAAGactAGTAAATGCGATGGAATGCCAGAATTTCTATGTTATGAGTGTGTTAGTCATGTGAATCGTTTTGTAAAGTTTAGGGACAAATGTAAGCGAGCTAACTTTACATTGAGAGAATTGCTAAAGAAGAATAAAGAGATAAAAATACCAATGTTAAAAGCCGTGAATCGTGCCATCATTGGTAACAAATCATCTTTATCGTATTTAAGTGTAGATAAAGCTCATTATgaagaaattaaatttcattgGATTAAAAACAACCGTATCACAACCATTTGTAGAGAGAAAATACCAATTGTTACGTATGGCACTCTTACAAAGGATGAAATGTTTGAGTCAATCCCTATAAGTGAAAACGTTGAATTCAAAGATGAACATGCTGTCAAAACTGAGAATGAAATAGACACACCTCATCCAGAAATTGGTCAAATAGAAATAACCATAAACGAAGTTAAAGATGGGTCAGAAGAAGATCATGCAACTACAAGCTGCTTCAATGCATGCgacaatatttatgaaaaaaatgaaGATTTCTCTGACAGTGACAATGATATAAGCGCTTTCGATAATGACACTAGCATGTTGGACAACGATACAAGCATAATGGAAAATGAATCAGATAAGACACATTTGGGTAGAACGAAAGTTGAAGAAAATAATGCTGATGGCAGTAAGTTGGATCAGGAATATGCAACAATTCTTCCAATTACTATGAAAGAGGCCCGAGCTGTTGTTGAAATATATAAAATGCTTGGCACTGGTAAACATCGCTGCCATATATGTAGTAAGGCTTTCTTTAATGAGAATAGGTTGAAAGCACATTTACGAATGCATGACAAGTATACTAATGGAACGTTTCATTGTGAATTATGTGATTACTACTATAAGACAGATTTCTTATTACGAACGCACATGACTGAGAAACATATgtacaaatatatttgtaagAAATGTCCAGAAGTCAATTTTCATCGTGCCTCAGCAAAACAGCATTACATATGGGCCCACCTCCAAAGAGGGAACAGAGGTCGCGGGCTATACTGGCCTAACGATCGACCGACTTGGCTCAGTAAAAAGGGAGGTAAACGAAAGAAAGCGGTCATCGTACCCAAGGCTCCTAAGAAACCAAGCAAGAAAATGCCAGACGACTTCCTTATATACACTCCGGTTAGACAAGAGGAGCAGTATCTATTGGTTAAGGCAAGAAGAATGACCAAGAACTATATTGAAGCGAAGTATAGGTGTGAATTATGCTTTAGGGGTTTTAGAGTGCTCCACACATATAATAAGCATATGAGGAAACATGATCcaGCCCTCTCAGGGAAGCTTCAATGTGACATGTGCAAGCTGTACTTCAGGGACGCTCGCAAGATGTACAAACACATGAACATCACACATCTCTTCAAGTTCTCCTGTCGAGAATGCGAGTATGTCTGTTTCAACAAgaGTCAAGCACATACGCACTATAAATGGCATAAGAATGTTACATATCCTTGTCCTCACTGCGATAAATTGTATacAAAACTGTCGACGAGATTAACGCACATACGAATGAAACATCCCTCGAATCACATATGCAATCTGTGCGGGCACAGTTTCGTCAGCGAGACGGGTCTCTACTGCCACAAGCAGATGGCTCATACTAGAGAGGAACTAGAGGAGGTTGCAGGCATCCCGGTGGACCCGACCAATCCTTTCTATTGTGCCGAGTGCAGCGTCCAGTTTGTGGGACAGGATGCATTTAACGTGCATCTAGGCAGCTCCAATAAACATGCGCTTAGCAATATTTCGGGCAAGGCGAACCACTTCCGCGAGCCGGCGGGCACGCGGCGGCGCAAGTACCAGAGCGCGTCCGACATCGTCAACAACGGCGCCGCCACGCCCACCAGCTGCGTCGAGTGTGGCAAATACCTGGTGAACGACGTTCAAGCACGCAAACACTACGAGAGCGAGCATCCCGGAACGGACTTCCTCAAGCGGTATATGTGCGATGTTTGCGGACACACTACTAAGCAATATGCGAACCTGATCGTCCACATGCGCACACACACGAATGAAAAGCCTTACGAGTGTCCGAGATGCGACCGCCGCTTCAGCATGCCCAGCAACAGGGACAGACATATGGTGGTGCACACGGGTGAGAAACGGTACCAATGCCAGCATTGCAACCGGCGCTTCACGCAAAGCAGTGCGGTCAAGCTTCACATCCAGACCGTGCATCTGAAGATACCCTACGCGCCCTGGGACAAGAAGAATAGGAAACGACGGAAGGAACTTGAAGGTACATCAGCGCCAGTGAGTACAGTAAGCGCGGCGACAGCTgcctaccaccctcacaggttaCTGTTAGACGCGCAAGGAGACTACCTCAATGCCTACATCACATACAACGACGAATAG
- Protein Sequence
- MWDIKACIVCFNTEVKLFNLDSGALRRQFNDIAGLKTSKCDGMPEFLCYECVSHVNRFVKFRDKCKRANFTLRELLKKNKEIKIPMLKAVNRAIIGNKSSLSYLSVDKAHYEEIKFHWIKNNRITTICREKIPIVTYGTLTKDEMFESIPISENVEFKDEHAVKTENEIDTPHPEIGQIEITINEVKDGSEEDHATTSCFNACDNIYEKNEDFSDSDNDISAFDNDTSMLDNDTSIMENESDKTHLGRTKVEENNADGSKLDQEYATILPITMKEARAVVEIYKMLGTGKHRCHICSKAFFNENRLKAHLRMHDKYTNGTFHCELCDYYYKTDFLLRTHMTEKHMYKYICKKCPEVNFHRASAKQHYIWAHLQRGNRGRGLYWPNDRPTWLSKKGGKRKKAVIVPKAPKKPSKKMPDDFLIYTPVRQEEQYLLVKARRMTKNYIEAKYRCELCFRGFRVLHTYNKHMRKHDPALSGKLQCDMCKLYFRDARKMYKHMNITHLFKFSCRECEYVCFNKSQAHTHYKWHKNVTYPCPHCDKLYTKLSTRLTHIRMKHPSNHICNLCGHSFVSETGLYCHKQMAHTREELEEVAGIPVDPTNPFYCAECSVQFVGQDAFNVHLGSSNKHALSNISGKANHFREPAGTRRRKYQSASDIVNNGAATPTSCVECGKYLVNDVQARKHYESEHPGTDFLKRYMCDVCGHTTKQYANLIVHMRTHTNEKPYECPRCDRRFSMPSNRDRHMVVHTGEKRYQCQHCNRRFTQSSAVKLHIQTVHLKIPYAPWDKKNRKRRKELEGTSAPVSTVSAATAAYHPHRLLLDAQGDYLNAYITYNDE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -