Mfla012122.1
Basic Information
- Insect
- Mecyna flavalis
- Gene Symbol
- Znf526
- Assembly
- GCA_949319885.1
- Location
- OX439421.1:7587307-7600750[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.026 2.3 9.7 5.7 1 23 286 308 286 308 0.98 2 11 0.016 1.4 10.4 0.4 1 23 315 337 315 337 0.98 3 11 0.075 6.6 8.3 0.3 1 23 341 364 341 364 0.97 4 11 0.078 6.9 8.2 2.7 1 23 371 394 371 394 0.96 5 11 1.7e-06 0.00015 22.9 0.2 2 23 400 421 400 421 0.98 6 11 4.7e-06 0.00042 21.5 3.4 1 23 427 449 427 449 0.98 7 11 0.00066 0.058 14.8 1.6 1 21 455 475 455 480 0.93 8 11 0.002 0.17 13.3 0.3 3 23 490 511 488 511 0.95 9 11 0.078 6.9 8.2 0.4 1 23 517 540 517 540 0.94 10 11 4e-06 0.00035 21.7 1.0 1 23 551 573 551 573 0.98 11 11 0.0011 0.1 14.0 1.7 1 23 579 602 579 602 0.95
Sequence Information
- Coding Sequence
- ATGGATTTAAACTTAATACATACTGAGGAAGACCTTAAAATTGATTTTGAAGTTCCTAAACCTATTTGTCGCTGTTGTTTGTCTACTGAAAAAGAAATGAGAGATGTCGTGCCTTACGATCCTTATTTTAGGGAATTAGCCGGAATTTCAGTGATGGAGTCAGATGGCCTACCACAATGGTTGTGCTGGGAGTGTGTTGCACTGCTTCAGAAGTCAGTCCGTTTTAAACACAAGATGTTGCGGGCCCACAATTTACTGTACGAGTACCTGACACGTTGCGCTCCTTTTCCCATAGATGCTGAAGACCCAGAATTGAGGAAGTACGCCACACCGCACCTCAGTGTCACGAATACCCTCACTTACTCCACGGGAGGCCGGGGGAAGATGGGCTATCATGACGATTTGAAGCATGAGTCTCCCTCCACAACGGCCCAGTTCCTCCCAGCCTCGCTGCCGTCATACTCCCAGCCGCTGTCTTTCTCGGAGAAGCACCCAGACGACCTGGTCAAGATTGAGGACGATGTGGACTTCGGCTATGACGATGACCTCACTTTGGACGAGTATAGGGTAACAAATAAGCTGACAGATGAAGACTTGCAGCAACTTCTAGAAGACACGAGTGCAATAGAGCCTAAAGACGAGCCTGAgcccaagaagaagaagagaactaagaagaaagaagataaagttaagaagaaaaagaaaggGGAAGACCAACCTGAAGCTTGGGAACGAAAGACATCGATTAGGAAGAGAGAAGATCTGGACCCCACCAAGATTAGGATAGTGACCCTCGACCCTGAGGAGCAGCTCCGACTGAGAATGGAAGAGAATAAATCGAACACAAGATTCCCTTTCCACTGCCATCTCTGCTTCCAAGGATTCAACTTTGAAGTGAAACTGGAAAACCATATGAAGAAACACAGTCCGTCCCGAGGCCCGTTCGAATGCAAATTCTGCCGAATGTACCTCCCAACTGCATACAGCTTCGAAGTGCACATGCTCATTCACACGCAGCGGTACGAATGCGTCGAGTGCAACCGCCGCATGACCGACCGCGCCTCCATACTGGACCATTACAGATCACAACACGAAGGAATACAGAATGTGTTTACTTGCAACATTTGCGGGAAACTGTCGAACAACAAAAAGACGCACAGAGGCCACATGCGTAACGTCCACGGCGGGGAGAGGCCCAAGTGCGACCAGTGCGGGAAGTCTTTCGTCAACAAGGACTCGCTTATTGAACATCTTTTAATCCACCAAGGCATCAAGAACTACGAGTGTACGGAATGCGGGAAGAGATTCCGAACTCGAGCGCAGATCAAACACCACCAGCTGAAGCACAGTGACATCAAAGAGTTCTACTGCGTCGAGTGCGACGTTAGattcAAGTCAGCACACAGTCTTCGACAACACTTGCTGAAGTCTTTGAAACATAAAGATAAAACTAGTTTCAAGTTTGGGTGCAACCGCTGCGACAAGCGCTTCGAGACTGACCGTGCTCTGCGCGCGCACGTGCTGATCCAGCACGAGGGCGTGCGCGCGCACCGCTGCGGCCAGTGCCCCGCCGCGCTGGCCTCGCGCGGCTCGCTGCTCAAGCACGTGCACAACGTGCACCGCGGCCTGAGGCCGAGGCCGCCGCCCCGCCACGTCTGCGACACCTGCGGGAAGGCATTCCGGGGTAAGAGCGTGCTGACGAACCACGTGCGCACGCACACGGGCGAGAAGCCGTTCGCGTGCGCGCACTGCGGCCGCGGCTTCTCGCAGCGCACCGCCATGCACACGCACGTCAAGCTCGTGCACCTCAAGATGAGGAGGCGGACCAAGGTGGAGTCAGAAAAACCGCCGGCCCCCGAACCTTTCGAACCAAAAATCCAGTTTCCGAAGCAGGAGCCCTGGGCGAACCAGCCGCCCTGCGACGTCTACTTCCAAATATCCGTGTAG
- Protein Sequence
- MDLNLIHTEEDLKIDFEVPKPICRCCLSTEKEMRDVVPYDPYFRELAGISVMESDGLPQWLCWECVALLQKSVRFKHKMLRAHNLLYEYLTRCAPFPIDAEDPELRKYATPHLSVTNTLTYSTGGRGKMGYHDDLKHESPSTTAQFLPASLPSYSQPLSFSEKHPDDLVKIEDDVDFGYDDDLTLDEYRVTNKLTDEDLQQLLEDTSAIEPKDEPEPKKKKRTKKKEDKVKKKKKGEDQPEAWERKTSIRKREDLDPTKIRIVTLDPEEQLRLRMEENKSNTRFPFHCHLCFQGFNFEVKLENHMKKHSPSRGPFECKFCRMYLPTAYSFEVHMLIHTQRYECVECNRRMTDRASILDHYRSQHEGIQNVFTCNICGKLSNNKKTHRGHMRNVHGGERPKCDQCGKSFVNKDSLIEHLLIHQGIKNYECTECGKRFRTRAQIKHHQLKHSDIKEFYCVECDVRFKSAHSLRQHLLKSLKHKDKTSFKFGCNRCDKRFETDRALRAHVLIQHEGVRAHRCGQCPAALASRGSLLKHVHNVHRGLRPRPPPRHVCDTCGKAFRGKSVLTNHVRTHTGEKPFACAHCGRGFSQRTAMHTHVKLVHLKMRRRTKVESEKPPAPEPFEPKIQFPKQEPWANQPPCDVYFQISV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01071846;
- 90% Identity
- -
- 80% Identity
- -