Basic Information

Insect: Mecyna flavalis
Gene Symbol: -
Assembly: GCA_949319885.1
Location: OX439421.1:5980540-5996062[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.00059 0.052 14.9 0.7 1 23 225 247 225 247 0.97

2 12 0.18 15 7.1 5.0 1 22 254 275 254 277 0.87

3 12 7.8 6.9e+02 2.0 3.3 1 23 281 303 281 303 0.94

4 12 0.00059 0.052 14.9 2.5 1 23 308 331 308 331 0.97

5 12 0.0012 0.11 13.9 1.5 1 23 335 358 335 358 0.95

6 12 0.069 6.1 8.4 0.3 3 22 377 396 376 400 0.92

7 12 4 3.6e+02 2.9 0.0 14 23 420 429 409 429 0.79

8 12 7.8e-06 0.00069 20.8 0.1 2 23 448 470 447 470 0.96

9 12 5.1e-06 0.00045 21.4 0.4 2 23 480 501 479 501 0.97

10 12 6.4e-05 0.0056 18.0 1.2 1 23 507 529 507 529 0.96

11 12 1.3e-06 0.00012 23.3 0.5 1 23 535 557 535 557 0.98

12 12 0.00048 0.042 15.2 0.4 1 23 563 586 563 586 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.00059	0.052	14.9	0.7	1	23	225	247	225	247	0.97
2	12	0.18	15	7.1	5.0	1	22	254	275	254	277	0.87
3	12	7.8	6.9e+02	2.0	3.3	1	23	281	303	281	303	0.94
4	12	0.00059	0.052	14.9	2.5	1	23	308	331	308	331	0.97
5	12	0.0012	0.11	13.9	1.5	1	23	335	358	335	358	0.95
6	12	0.069	6.1	8.4	0.3	3	22	377	396	376	400	0.92
7	12	4	3.6e+02	2.9	0.0	14	23	420	429	409	429	0.79
8	12	7.8e-06	0.00069	20.8	0.1	2	23	448	470	447	470	0.96
9	12	5.1e-06	0.00045	21.4	0.4	2	23	480	501	479	501	0.97
10	12	6.4e-05	0.0056	18.0	1.2	1	23	507	529	507	529	0.96
11	12	1.3e-06	0.00012	23.3	0.5	1	23	535	557	535	557	0.98
12	12	0.00048	0.042	15.2	0.4	1	23	563	586	563	586	0.92

Sequence Information

Coding Sequence: ATGAGTGCTCTCGTGGTTTGTAGGATGTGTTTAGCATTGGACGCTCGTATGTACGCGATTACCAATACGCCGTTGCAAGAAATATATGAGAAAATGACAAACATATTGCTTCAAAACGAAGATGGCATACCAATCATGGCTTGTTACATTTGTCACTATTTGCTCACAAAAAGTCAAGCGTTCATCGAAAAGGCGTTGAAAGCTGACTCTCTGCTCAAACAGATAGTGAGCTCTGAACTAGGGATGACAGAGAAATCTATAAGCATGTTAAGCCCTCCTCTAAACAACTATCTGAGTGTGTCACCGGTTGACTGTGTGAGCTATGGCGAAGCTGAGTCAGTGGAGGTGCCGGTCAAGATTGAGCAGTGCCCGGTCAAGAAAGAGAAGGAGGTGGAACCTGAGATGGAAGATGTGGCGACAGAAGACACCCCACAGCTGGACGTCCGGGAGCCCAGTTCGGAGTCAGAAGATGACCTGCCTCTACAGACCATCAGCTCTAGAAACAACTCCAAGATTCCCACCACGACTTGCAATGGGAAACCTAGGAAGACTGGGGAAACAAAGCGGGCGGTAAAAATAAAAGCCGACGTCCGAGAAGTAATACTAAGCAAAGAAGAACAACTAGCAGAGTTGATGGAGCGAGCCAAGTCTCTCAATTACATCAACTCTCCCTTCAAATGTAACCTCTGCTACAAAGGCTTCGTGGACGCCAGGGCTTTCCAGAACCACGAGGAGAAACATGACGAGCGTAGCGGCTCCCACGCGTGTGAAGTGTGCCGCATGCGGTACAAAACCGCCCGCCATCTCCGCAACCACTGCGCGACGTCCCACCAACGACAGTACATCTGCAATAAGTGCAGCCATCGTTCACACACCGCGAATCAAGCCAGAGAGCATGAGAAGTGGCATAACGGTCACACCTATGACTGTCAGCTTTGCAGCCAGGCTTTCAGAAAATCTACATCATACTTGACACATATGCGTAAGAGGCATCCGACTGAACATGTGTGCAATATATGTGGGGAGAGCTTCGTGGGCAGGCACGGGCTGCTTATGCATAAGAGCAAGTCACACTGGAGGGATGACGAGAAGAGTGAAAACGATCAGAATTCAGAGGGGAACAGTTTCTGTTCGGTGTGCAACATTCAGTTCCGGTCTGTAGAGGCTTGGAAACGACATGTGTTAACTTCGCTCAAGCACGCACTTGGAAATGAGAATAGTGTGACCTGCCTAGCGTGTGGGGAGGCTGTCCCCGGGGCGTCTCTCAGGGCGCACGTGAGAACGCACGCGGCCGCCAGACCGCCCAAGACCACGCCTACCGACACGCCCACTGCACGACTGCCTTGCGAACAgtgtGGTATGGCGTTTGTGAACCGATCCAAATTGCAAGCTCATGTTCGAAGGGTGCACCTAGGATTTAAATACAACAAAAACATAGTATGTGAAGTATGCGGCAAGAAATGTACGTCGCTGGCGTCGCTAGCGGCGCACCAGCGCACGCACACGGGCGAGCGGCCGCACGCCTGCGCGCTGTGCGCCAAGCGCTTCGCCGACAGGAACCAGCTCAGGATCCACCAGCGGACGCACTCGGGCGAGCGCCCGTACGCCTGCCGCGTCTGCCCGAAGCGGTTCAGCCAGAAGCCTGCGCTCAACAGGCATTATAGGGTGCACACAGGGGCGAAGCCCTACGCCTGCCAGTTCTGCGCGAAGACATTCAGTCAGTCCAACTCGCTGAAGCTCCACGTGAGCGCCGTGCATTTTAAACTGCCTCAGAATAAGAAGAAACCGCCCCTAGCCCCCACGGAACAGGCTCAAGCTCAAGACTTGTAG
Protein Sequence: MSALVVCRMCLALDARMYAITNTPLQEIYEKMTNILLQNEDGIPIMACYICHYLLTKSQAFIEKALKADSLLKQIVSSELGMTEKSISMLSPPLNNYLSVSPVDCVSYGEAESVEVPVKIEQCPVKKEKEVEPEMEDVATEDTPQLDVREPSSESEDDLPLQTISSRNNSKIPTTTCNGKPRKTGETKRAVKIKADVREVILSKEEQLAELMERAKSLNYINSPFKCNLCYKGFVDARAFQNHEEKHDERSGSHACEVCRMRYKTARHLRNHCATSHQRQYICNKCSHRSHTANQAREHEKWHNGHTYDCQLCSQAFRKSTSYLTHMRKRHPTEHVCNICGESFVGRHGLLMHKSKSHWRDDEKSENDQNSEGNSFCSVCNIQFRSVEAWKRHVLTSLKHALGNENSVTCLACGEAVPGASLRAHVRTHAAARPPKTTPTDTPTARLPCEQCGMAFVNRSKLQAHVRRVHLGFKYNKNIVCEVCGKKCTSLASLAAHQRTHTGERPHACALCAKRFADRNQLRIHQRTHSGERPYACRVCPKRFSQKPALNRHYRVHTGAKPYACQFCAKTFSQSNSLKLHVSAVHFKLPQNKKKPPLAPTEQAQAQDL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -