Basic Information

Insect: Mecyna flavalis
Gene Symbol: -
Assembly: GCA_949319885.1
Location: OX439408.1:7249052-7261426[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.0024 0.21 13.0 1.1 1 23 295 317 295 317 0.98

2 12 4.7e-05 0.0041 18.4 1.6 2 23 325 346 324 346 0.93

3 12 0.032 2.8 9.5 0.8 1 23 350 372 350 372 0.97

4 12 0.00052 0.046 15.1 0.9 1 23 377 400 377 400 0.98

5 12 0.0014 0.13 13.7 0.1 1 23 404 427 404 427 0.94

6 12 0.034 3 9.4 0.1 3 21 444 462 443 467 0.91

7 12 0.00088 0.078 14.4 0.7 3 23 477 498 477 498 0.98

8 12 0.44 39 5.9 0.5 3 23 613 634 612 634 0.96

9 12 6.9e-06 0.00061 21.0 0.5 1 23 645 667 645 667 0.99

10 12 1.4e-05 0.0012 20.0 1.4 1 23 673 695 673 695 0.99

11 12 0.02 1.7 10.1 3.2 1 23 701 723 701 723 0.98

12 12 6.2e-05 0.0055 18.0 0.2 1 23 729 752 729 752 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.0024	0.21	13.0	1.1	1	23	295	317	295	317	0.98
2	12	4.7e-05	0.0041	18.4	1.6	2	23	325	346	324	346	0.93
3	12	0.032	2.8	9.5	0.8	1	23	350	372	350	372	0.97
4	12	0.00052	0.046	15.1	0.9	1	23	377	400	377	400	0.98
5	12	0.0014	0.13	13.7	0.1	1	23	404	427	404	427	0.94
6	12	0.034	3	9.4	0.1	3	21	444	462	443	467	0.91
7	12	0.00088	0.078	14.4	0.7	3	23	477	498	477	498	0.98
8	12	0.44	39	5.9	0.5	3	23	613	634	612	634	0.96
9	12	6.9e-06	0.00061	21.0	0.5	1	23	645	667	645	667	0.99
10	12	1.4e-05	0.0012	20.0	1.4	1	23	673	695	673	695	0.99
11	12	0.02	1.7	10.1	3.2	1	23	701	723	701	723	0.98
12	12	6.2e-05	0.0055	18.0	0.2	1	23	729	752	729	752	0.98

Sequence Information

Coding Sequence: ATGGATCAAGTAAGAGCTTGTAGGATATGTTTAACAACTGGAGTGAAGATGAACGACTTGCGATGTTATCCATTGGTGAACTATTTCGAATCCATTGCTGGCATGAGCGCACCTGCTGCTATGGATCTCCCTCCATATGCCTGCTATGAGTGTACTGCTTACATAAGAAACACCTTCCTGTTCAGGGAGAAGTGTCTGCGGGGTCAATCCACTCTGTACAATATGTTGAGATTAACAGGAAAGatCACAGAAACTAGTATTCAGAGTGTTGACAGACTGCACTTAAATCTGATTTCCAATATTAAATACAATGTAATTCCTAACCATATCATACATGTATTGCATGAAAAACCAGATGTATGTGAAATAAAAGTTGAACCATCAAATGAGGTTATATTACCAGAAAATAATGAAGAAGTTGAGGTGTCTTTTTTTAAAGCAGAAGTGGAATTTACTAATATAGACTCACCAGTGATATTTAATAGCGACGATGACGACGAGCCTTTATCATTTCACAAGAGCTATAAAGAAGCTGTAGAAATCAAAGTTGATAAAGAAaagggaaaaaagaaaataaagagtgaTGGAGAAGTTGATATGGAAGACGAAGCTGTGATGGGGAAGGCAGAGGGCACCTCACAGAAAAAAGATCCACCAGAGGGCACAGTACAGAGGAGGAAGCGTGGTAGACCGAGAAAGAATGAAGAGGGACCAGTAAAGAAAGAGCGGTCTGCCATCTCGCGACGAACGAAGAACACTGGTGGCGTGGACGACAATGACATCGACTTAGAGGAATACGTCACTATCATTAAACTTACTAAAGAAGAGCAGCTCGAAGAAATCACAAAGCGGCAGACCTCATCGAACTACCAAAACGCTCCGTATAAATGCAATCTGTGTTTCAAGGGGTTCATTGACACGGATGCCTGGGAGCACCACGTCAGCAAACATCAGCCGACGCCAGGCGATTTAGAATGTCCTATTTGCAAGTTCCGCTTCAAGACCAAGAGGAATCTGCAGAAACACAGCGCTAACCACGAAAAGAAATATGCGTGCAAGTCATGTCCCTATGTATCAAAAACAACAACTCAAGCGAAACAGCACCAAAGATGGCATAAAGGAGTGACGTACAAGTGTCAGTATTGTGACGAAGTTTCTACgAAATGGACGTCATACTTAAGTCATGTGCGAATCAAGCATCCCTCTGAGTTTATATGTGGTGTGTGCGGGTACTCGTTCGTGAGCCAACTCGGACTGAACATGCATAAAACAATGATGCATAAGCAAGTTACGGAGAAAGAAGAAGGCAAGAAGGAGGCAGGCCCGTACTGCGCCGTTTGTGACGTAAAGTTCGTATCAATGGAGGCGTATAGGCGGCATATGGTCACCTCGGTCAAGCACACGCAGAACGACGACTTTAAGAATGGGTGTCGAGTCTGCGGTGAGACATTTGCAAACGGTGAGGAGTTGCGCGTCCACCACCGACGGATGCACGCGCGGCAGCGGCCTAAGAACTACGGCAAGAAACCGGCGAACACCACCTGGCCCGCCAACTGCGAGCATGTGAGTAACTGTGATCATGTTAGAATCAATCAACTGCGCATCGTAGGTATTTTGCAAATAGCAAGGATTTTCGTCTTTATCACCGACGGATGCACGCGCGGCAGCGGCCTAAGAACTACGGCAAGAAACCGGCGAACACCACCTGGCCCGCCAACTGCGAGCATGTATTTTGCAAATAGCAAGGATTTTCGTGTTTATCACCGACGGATGCACGCGCGGCAGCGGCCTATGAACTACGGCAAGAAACCGGCGAACACGACCTGGCCCGCCAACTGCGAACACTGCTCAGAAGAAATAGCGAATGCTCGGGATTACTGGACGCATTTCAGACGAGCCCACCCCGACAAGCCCTACCCCATTCAAAAGGACTACGTCTGTGATATCTGTGGCAAGAGCTTTCGGGGAAATGCATTCCTGGTCTACCATAAACGGACGCACACAGAGGAGCGTGCATACAAGTGCGCGCAGTGTCCCAAAGCATTCTTCAATAGAACCAACCTACAGATGCATGAGAAGACCCATTCCGACCACCGGCCTTATCCGTGCACCATGTGCTTTAAGGCTTTCAAGTGCAAGGGCGCGCTGGATAGGCATTTCAGGAGCCACACAGGTGTCAAGCCTTACGAATGCGAAGTTTGCGGTAAAGCATTCGGCCAGTCCAACAGTCGCAAACTCCACGTGAGAACTGTACACTTGAAGCAACCGGCGCCGTATATCAGCCGAGCTCGACTCGAACGAACCCGGGGCAAGCTCGGGCAAACTAAGGACCCGCCACCGCAACAGTATGCTTATTAG
Protein Sequence: MDQVRACRICLTTGVKMNDLRCYPLVNYFESIAGMSAPAAMDLPPYACYECTAYIRNTFLFREKCLRGQSTLYNMLRLTGKITETSIQSVDRLHLNLISNIKYNVIPNHIIHVLHEKPDVCEIKVEPSNEVILPENNEEVEVSFFKAEVEFTNIDSPVIFNSDDDDEPLSFHKSYKEAVEIKVDKEKGKKKIKSDGEVDMEDEAVMGKAEGTSQKKDPPEGTVQRRKRGRPRKNEEGPVKKERSAISRRTKNTGGVDDNDIDLEEYVTIIKLTKEEQLEEITKRQTSSNYQNAPYKCNLCFKGFIDTDAWEHHVSKHQPTPGDLECPICKFRFKTKRNLQKHSANHEKKYACKSCPYVSKTTTQAKQHQRWHKGVTYKCQYCDEVSTKWTSYLSHVRIKHPSEFICGVCGYSFVSQLGLNMHKTMMHKQVTEKEEGKKEAGPYCAVCDVKFVSMEAYRRHMVTSVKHTQNDDFKNGCRVCGETFANGEELRVHHRRMHARQRPKNYGKKPANTTWPANCEHVSNCDHVRINQLRIVGILQIARIFVFITDGCTRGSGLRTTARNRRTPPGPPTASMYFANSKDFRVYHRRMHARQRPMNYGKKPANTTWPANCEHCSEEIANARDYWTHFRRAHPDKPYPIQKDYVCDICGKSFRGNAFLVYHKRTHTEERAYKCAQCPKAFFNRTNLQMHEKTHSDHRPYPCTMCFKAFKCKGALDRHFRSHTGVKPYECEVCGKAFGQSNSRKLHVRTVHLKQPAPYISRARLERTRGKLGQTKDPPPQQYAY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -