Mfla012642.1
Basic Information
- Insect
- Mecyna flavalis
- Gene Symbol
- -
- Assembly
- GCA_949319885.1
- Location
- OX439422.1:5070304-5073738[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 2.2 1.9e+02 3.7 1.3 1 23 28 52 28 52 0.90 2 19 2.5 2.2e+02 3.5 1.7 1 23 123 145 123 145 0.96 3 19 0.011 0.93 11.0 0.9 1 23 149 171 149 171 0.98 4 19 0.14 12 7.5 0.1 1 12 178 189 178 201 0.86 5 19 0.12 10 7.7 2.0 2 23 209 231 208 231 0.92 6 19 4.3e-05 0.0038 18.5 1.6 1 23 238 261 238 261 0.98 7 19 0.0012 0.11 13.9 2.4 1 23 267 289 267 289 0.97 8 19 9.7e-05 0.0085 17.4 0.5 1 23 295 317 295 317 0.99 9 19 0.37 32 6.1 2.2 1 15 323 337 323 339 0.88 10 19 0.0038 0.34 12.4 1.2 1 23 397 420 397 420 0.92 11 19 0.37 33 6.1 0.1 2 23 447 469 446 469 0.95 12 19 0.079 7 8.2 0.2 2 23 492 513 491 513 0.96 13 19 0.067 5.9 8.4 0.0 1 23 517 539 517 539 0.94 14 19 0.0028 0.25 12.8 1.9 1 23 544 567 544 567 0.96 15 19 0.13 11 7.5 1.0 2 23 575 597 574 597 0.91 16 19 0.00022 0.019 16.3 0.7 2 23 605 627 604 627 0.96 17 19 0.0015 0.13 13.7 2.5 1 23 633 655 633 655 0.97 18 19 8.3e-06 0.00073 20.7 1.4 1 23 661 683 661 683 0.99 19 19 0.0069 0.61 11.6 1.4 1 20 689 708 689 708 0.97
Sequence Information
- Coding Sequence
- ATGGACAAGCACCGTCAAAATCTCGTAGAAATTCTTCTTAATACTAACGCGACGCCAATAAGGACCTTTGACGGCCTCGGATACACATGTTCCTTCTGTTCGAATGGTTCGTTCCGTGAACTTAGAGAGTTGAAAAAGCACACTTTAGAGCAACACAAAGATAcggataagaaaaaaattatggaaAACCATCCTCCAGCAGGGTACCTGGTAAAACTAGACGTGACGTCGTTCCAATGCATATTATGCGAAAAAAACATACTAGAATTGGAGGAAATGATGAAGCATTTGATATCAGAACATAATAGGACTCTTTATACTGATATAAAGAACCGTATGCTTCCGTTCAACTTCGAAGACGGTGTTTTCGATTGCGTTGTCTGTCGGAAGAAGACAGAACACTTCAAAGTAATGCAGGAGCATTTAAACGTGCATTACGGCAGCTTTTACTGCGACCAGTGTTCAGCTCCATTCATGCTGCAAAGAAGCTTAAGAAGCCACGTGAAGCGGCATAAACAGGGAGAGAAGACATACCCTTGCCCGGTATGTTCGAAGGTTTTCGACACGATCCCGAGGAGGGACGCCCACGCGAAGGCCGTCCACAGAGACGCGAACAAACGGAATAAATGCCCTATATGCTCTGAAAAGTTTCAGTCACACTATAAAAAGCAGGAGCATATGGTTCAAGAACATGGAATGGAGCCAAAACTCTACAAATGTTTGGCATGTGACAAATCTTTTGTTTCTAAGAGTAGATTGAATATGCATCGAAGGAGAGACCACCTGTTGGAGAGGCGGCACGAGTGCCAGGAGTGCGGTAAAAAGTTCTTTGCCACGAAAGGGTTGAAATATCACATGCTATCTCATACTGGCGCAAAGGAGTTTCAATGCGATGTGTGCTTAAAGTCATATGGAAGAATCACAACTTTGCGCGAGCATATGAGGATACACAAAGACGATAGGCGATTTAAGTGTGAACATTGTGAGCAAGCATTCGTGCAGAAATGCAGCTGGAAAGGTGGTCCACTGAAACGTACCGTCAAAACGCAAAGGTTAAACCTAAACGGAGGATACTTAAAGGAGGATCACACGAAACAGACTCCTGAACTGGAGAAGCACCGTGCCAACGTCAGGCTGATATTGCAATGTTCAAACGCGACCCCTATACGATGTCGCGGCGGCATCGGTTACGCCTGCTGCTTCTGTCACGAGCAGTTCCCTGACCCCGCAGATCTCAAAGCCCACACTCTAGACCAACACGATGATAAAGCGAAACTCAAATTTATGAAAGGGAAAATGATGTACTCCTTTCTCGTCAAACTAGATATCTCTAATTTACAATGCAACATTTGCAATGCAAACATCGACTCTTTAGAAGACTTCTTAACGCATTTGATTAAAGTCCAcggtaaaaatatttacacagaTATTAAAAATCATATTCTACCATTCAAATTTGATGACGGTGCCCTACGTTGCGTCGTGTGTGCGAATATTTTCAACAAATTCAAAGCACTTCTGGAACACATGAACACTCATTACCGGAATTACGTTTGCGATGTTTGTGACGCCGGTTTTGTGACTAGAAACATACTGATGAACCACACGGAAGCCCACAAGACTGGGGTGTTTCAATGTGACTATTGCGAAAAGGTTTTCGACACGCTCAGAAAGAAGAAGTCTCACGAAAAGTCTGTTCACATTCACGGTAACTTGTTGAATAAGTGCGGGTATTGCAATGAGAAGTTTAAGGATTACAGAAAGAAAGACGACCACATAGCAAAAGTTCATGGAGTGCCGATGTTGGCGCTGAAGTGTCAGGCTTGCGAGAAGACATTTGCGACTAAAACTGCGCTCACGATTCACACGAAGAGAGATCACTTGATGGAGAGGAAGCACAAGTGTGCTCAGTGTGACATGATGTTTTTTAAGACGAGTGAATTGAAGGAACATATGGTTAAGCATACTGGGATGAGAGATTTTCAGTGCAACGTGTGTTTGAAGTCATATGGAAGAAAGAAGACGTTGACAGAGCATATGAGGATCCACGCAGATGATCGAAGGTTCAAATGCGAGTTCTGTGGTCAAGCGTTTGTGCAGAAGTGTAGCTGGAAGGGGCATATGTGGGCGAAGCATGGTGTAAGAGAGAGACATTGA
- Protein Sequence
- MDKHRQNLVEILLNTNATPIRTFDGLGYTCSFCSNGSFRELRELKKHTLEQHKDTDKKKIMENHPPAGYLVKLDVTSFQCILCEKNILELEEMMKHLISEHNRTLYTDIKNRMLPFNFEDGVFDCVVCRKKTEHFKVMQEHLNVHYGSFYCDQCSAPFMLQRSLRSHVKRHKQGEKTYPCPVCSKVFDTIPRRDAHAKAVHRDANKRNKCPICSEKFQSHYKKQEHMVQEHGMEPKLYKCLACDKSFVSKSRLNMHRRRDHLLERRHECQECGKKFFATKGLKYHMLSHTGAKEFQCDVCLKSYGRITTLREHMRIHKDDRRFKCEHCEQAFVQKCSWKGGPLKRTVKTQRLNLNGGYLKEDHTKQTPELEKHRANVRLILQCSNATPIRCRGGIGYACCFCHEQFPDPADLKAHTLDQHDDKAKLKFMKGKMMYSFLVKLDISNLQCNICNANIDSLEDFLTHLIKVHGKNIYTDIKNHILPFKFDDGALRCVVCANIFNKFKALLEHMNTHYRNYVCDVCDAGFVTRNILMNHTEAHKTGVFQCDYCEKVFDTLRKKKSHEKSVHIHGNLLNKCGYCNEKFKDYRKKDDHIAKVHGVPMLALKCQACEKTFATKTALTIHTKRDHLMERKHKCAQCDMMFFKTSELKEHMVKHTGMRDFQCNVCLKSYGRKKTLTEHMRIHADDRRFKCEFCGQAFVQKCSWKGHMWAKHGVRERH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -