Basic Information

Insect: Mecyna flavalis
Gene Symbol: -
Assembly: GCA_949319885.1
Location: OX439410.1:2705822-2714086[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.00035 0.031 15.6 2.6 2 23 85 107 84 107 0.96

2 11 0.16 14 7.2 1.3 3 23 116 137 115 137 0.94

3 11 0.0011 0.093 14.1 0.4 1 20 142 161 142 163 0.95

4 11 1.6e-06 0.00014 23.0 0.3 1 23 174 197 174 197 0.96

5 11 0.0095 0.84 11.1 2.0 1 23 203 226 203 226 0.95

6 11 6.3e-05 0.0056 18.0 0.1 1 23 232 254 232 254 0.98

7 11 0.0078 0.69 11.4 0.4 1 23 259 281 259 281 0.97

8 11 2.3e-05 0.002 19.4 2.5 1 23 287 309 287 309 0.97

9 11 4.3e-06 0.00038 21.6 0.4 3 23 314 334 313 334 0.99

10 11 1.8e-05 0.0016 19.7 0.9 1 23 373 395 373 395 0.98

11 11 1.9 1.7e+02 3.9 0.7 3 23 403 425 402 426 0.80

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.00035	0.031	15.6	2.6	2	23	85	107	84	107	0.96
2	11	0.16	14	7.2	1.3	3	23	116	137	115	137	0.94
3	11	0.0011	0.093	14.1	0.4	1	20	142	161	142	163	0.95
4	11	1.6e-06	0.00014	23.0	0.3	1	23	174	197	174	197	0.96
5	11	0.0095	0.84	11.1	2.0	1	23	203	226	203	226	0.95
6	11	6.3e-05	0.0056	18.0	0.1	1	23	232	254	232	254	0.98
7	11	0.0078	0.69	11.4	0.4	1	23	259	281	259	281	0.97
8	11	2.3e-05	0.002	19.4	2.5	1	23	287	309	287	309	0.97
9	11	4.3e-06	0.00038	21.6	0.4	3	23	314	334	313	334	0.99
10	11	1.8e-05	0.0016	19.7	0.9	1	23	373	395	373	395	0.98
11	11	1.9	1.7e+02	3.9	0.7	3	23	403	425	402	426	0.80

Sequence Information

Coding Sequence: ATGCCTCCCAAGCGCAAAAGATCAACAAAATTAGGAGGAGTGAAGAAAAAGAAAGCTCAGAGGAAATTGAAGAAAGTGAAAAAAGAGGTGAAGGAAGAAATTGTCGAAGATAATGTGGATGTACCATTACTAGTTTGCAAACGTTGCAGTGGGCCTGGTAATACTGGTGAGGGCAGGAGGAAGGTTTCCTCGAAAAACTGCCCCTGCAAGCAGCTAATAGACCTAAGCAAAGTGACCGTCAAGCCTCCAATCAAGTGTAAAGAATGTACAAAGGTGTTCAAGTTCCGAACAAGTTATTTAAAACACCTAAAAAATGAACATTCCAAGACTCCTGGCAGTGTGGCCTGTAATCAGTGTCATGTGGTCTGTCCCAACAAAAAGGTGCTAGTACAACACATCAATGATTTGCATAACAGGATGGAATATGCATGTCCGGCGTGCAATAAAAAATTTGTAAGACACGCACACGTCCTGCGACACATGGCTCAAAGTGGTTGTGATGGTACTCAAGTATCAATGTACCCATGTGAGATATGTGATGCCAAATTCTCCAGAAAGGACAACTTGATAGTACACCTACGTTTCCAGCATATTCTAAATGCCGGTTATAAGTGCAAGCTCTGTGATTTCAAGATCAAAAATTTTTCTAAACTCATCAAACATTGGCAGGAGACTCATATTGatccACCAAGATATGAATGTGATATTTGTGGAAAGTCAACTTCATCTCGAACATCAATTGCTAAACATCTAGAGATTCATGGGACGAAGAAATATGCTTGCGACACATGCGGATACCGCACGTTCACGGCGGAGGTGATGAAGCGGCACCTGCTGACGCACGTGCAGGACAAGCCGCACAAGTGCGACGTCTGCGGCCGGTCCTACATCCAGCGCAGCCAGCTGCTGCGCCACTTCGAGAAGCACACCGGCAACCTCTGCCCCATTTGTGGACAGAGCTTTGATTCCAAGTCCAGATTAATAATTCATCGGAGGACTCACGATGGGCTTGAGCGACTGCTGTGTCCGTTCGAAGACTGCATTCAGTCGCGGAAGGAGTTCAGCAATGAAGCCAGCCTGGACGCGCATGTCGCCGCGCATTTGAATCCTAAAAAGTACCCGTGCGAGGTGTGCGGCAAGAGCTACCACTCGGCGGTGAACATGAAGCGGCACACGGAGACGCACCTGCTGGACCGGCCGCGGCGCTGCATGTACTGCGTGTCGGCGCGCGCCTACATCCGCGGCGAGCAGCTGGTGCGCCACGTGCGCAAGCACCACCCCGACCTGTTCGCCGCGCACCTCACGCACGTGCGCCAAGTGCTGGGCACGAGCGTGGCCGTGGACCGCGTGAAGCGGTCGGAGCTGCAGTCGGTGCTGAACATGCTGGACGCGGAGTCGGAGCGCATCCTGGACGGCTACAGCGGCTCCGGCGTGCTGTACGGCGGCGTGCAGGCCAATACCGCGCCCATAGACACCGTCAAGGTACGCGTGCATGAGTCGGAGCGCATCCTGGACGGCTACAGCGGCTCCGGCGTGCTGTACGGCGGCGTGCAGGCCAATACCGCGCCCATAGACACCGTCAAGGTACGCGTGCATGAGTCGGAGCGCATCCTGGACGGCTACAGCGGCTCCGGCGTGCTGTACGGCGGCGTGCAGGCCAATACCGCGCCCATAGACACCGTCAAGGTACGCGTGCATGAGTCGGAGCGCATCCTGGACGGCTACAGCGGCTCCGGCGTGCTGTACGGCGGCGTGCAGGCCAATACCGCGCCCATAGACACCGTCAAGGTACGCGTGCATGAGTCGGAGCGCATCCTGGACGGCTACAGCGGCTCCGGCGTGCTGTACGGCGGCGTGCAGGCCAATACCGCGCCCATAGACACCGTCAAGGTACGCGTGCATGAGTCGGAGCGCATCCTGGACGGCTACGACGGCTCCGGCTCTGAAATCAGCCCGTTAATGACGGAAGAGGAACTCGTTGAGAATCTGAGGAAGTTACTCTCGCAGCTGATCGATCATGAAACTCTGGAATGCTTCGGATGGCCAGACGAGAATGTCGACACGGTGCTGGAGAAAGTGATCGGTCACATGGGCCTGCGCGCGGCGGACCCGGAGCGCTGGACGCGGGTGCAGTGCCTGCGCGAGAACACCAAGCAGCTGTTCCTGTACGCCGTCGAGGACAAGGCCGTGGCGCGCATGCTCGACACGCACACCATCGACCAGATCGTCCAGCATATCCTCGCGCAGGTCGCCGACGCCGACGCGCCCGCCTAG
Protein Sequence: MPPKRKRSTKLGGVKKKKAQRKLKKVKKEVKEEIVEDNVDVPLLVCKRCSGPGNTGEGRRKVSSKNCPCKQLIDLSKVTVKPPIKCKECTKVFKFRTSYLKHLKNEHSKTPGSVACNQCHVVCPNKKVLVQHINDLHNRMEYACPACNKKFVRHAHVLRHMAQSGCDGTQVSMYPCEICDAKFSRKDNLIVHLRFQHILNAGYKCKLCDFKIKNFSKLIKHWQETHIDPPRYECDICGKSTSSRTSIAKHLEIHGTKKYACDTCGYRTFTAEVMKRHLLTHVQDKPHKCDVCGRSYIQRSQLLRHFEKHTGNLCPICGQSFDSKSRLIIHRRTHDGLERLLCPFEDCIQSRKEFSNEASLDAHVAAHLNPKKYPCEVCGKSYHSAVNMKRHTETHLLDRPRRCMYCVSARAYIRGEQLVRHVRKHHPDLFAAHLTHVRQVLGTSVAVDRVKRSELQSVLNMLDAESERILDGYSGSGVLYGGVQANTAPIDTVKVRVHESERILDGYSGSGVLYGGVQANTAPIDTVKVRVHESERILDGYSGSGVLYGGVQANTAPIDTVKVRVHESERILDGYSGSGVLYGGVQANTAPIDTVKVRVHESERILDGYSGSGVLYGGVQANTAPIDTVKVRVHESERILDGYDGSGSEISPLMTEEELVENLRKLLSQLIDHETLECFGWPDENVDTVLEKVIGHMGLRAADPERWTRVQCLRENTKQLFLYAVEDKAVARMLDTHTIDQIVQHILAQVADADAPA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -