Mfla011945.1
Basic Information
- Insect
- Mecyna flavalis
- Gene Symbol
- Bcl11a
- Assembly
- GCA_949319885.1
- Location
- OX439421.1:5731467-5747005[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.0033 0.29 12.6 0.7 1 23 16 39 16 39 0.95 2 15 0.0036 0.32 12.4 0.2 2 23 80 102 79 102 0.91 3 15 6.7e-06 0.00059 21.0 0.7 1 23 108 131 108 131 0.97 4 15 1.6 1.4e+02 4.1 0.1 3 13 142 152 141 153 0.89 5 15 0.056 4.9 8.7 1.1 2 23 304 326 303 326 0.90 6 15 0.058 5.1 8.7 0.1 2 23 333 354 332 354 0.97 7 15 0.21 19 6.9 2.1 2 23 359 381 358 381 0.96 8 15 0.057 5.1 8.7 1.8 1 23 385 408 385 408 0.96 9 15 4.6e-06 0.0004 21.6 3.3 3 23 413 433 411 434 0.94 10 15 0.017 1.5 10.3 8.1 2 23 438 459 438 460 0.95 11 15 0.0067 0.59 11.6 0.2 3 22 475 494 474 498 0.91 12 15 4.2e-05 0.0037 18.5 0.1 2 23 507 529 506 529 0.96 13 15 0.018 1.6 10.2 6.9 1 23 535 558 535 558 0.95 14 15 8.9e-05 0.0079 17.5 1.0 2 23 568 589 567 589 0.97 15 15 9.2e-05 0.0081 17.5 1.0 1 23 595 618 595 618 0.98
Sequence Information
- Coding Sequence
- ATGAGATACTGCATCAAAGATCATttaagGAAGCAGCATTCCCCGTTCGAGTGCAAACCCTGTGGGAAGAGGTTCGCTCGCTACAACGGGCTGTGGCTTCACAAGAAGCTGCGCCACTCCTCTCCCACCCCGCCTGCGTACTGCGTGGAGTGCGACAAACAATATCTTGACGTATACAGGTACAGATGGCATTTAGCGAACAGTGCTCGTCAcaaaccgaaaaaaaaagttaaGATCCCCTGCCCATCTTGTGAAAAAGTATTCTCCAAGAAAATATATATGACTAATCATTATGATTTGGTTCATCTGAAGCAATATAGGTTCCGGTGTGAACAGTGTGATAAGAACTTCATCCGCAACGCAGATCTGGTTAAGCATAACCGACGGGTCCACGAAGGCATACTCCCCCCGAGGAATAAGATATGCTACGTGTGTGGAAGAGGATTCACTGACAACTTGCCAATCACACCGCTGTCAACATTGACAATAACAATGAAAGATGGCTTCCACAAAACCATAGACTACGAAGCAAGACCAAAGACACCAGACCCAGAAACATGCATACTACCAGAAGTTATAAAACAAGAAGTGACCGATGATGACAATGATAATTTACACTTCAACGATGATAGTTTCAGTGATAATGATATATTAACGATagatttaaacaaattaaaagaaattaatgaTCAAAATCATATAAAAGTGAAACAAGGAGATAAacttaataaacaatttattagaAAACAGAGTATACGGAAATATGAAAGTAAAGCTcgtattacaaaattaaaagtagATTTGACAGACACAAGGAAACATTGTACCTCTGTCATATTGACAGAGAAAGAGATAGAAGAAGTGTTAGAAAGAGATAAAGTGTGCTACGGATACAACAAGATGACTAATAAATGTAGGGAGTGCAAAAATGCATATAAACGTGTTGTTGATCTTAGAAGACATGTGACTTTTAATCATATGAAGaCGATACCATCAAAATGTTCGCTCTGCGACATACCCATATCATCTTGGGAAGGTATGTCTGAACACTGGCGGCGGCATAACGCGTATCTGAGATGCAACATGTGTGGTTGGCTGTCTCACTCGCTCGCGGCCATGACGAAGCACCACAGGCGCGTGCACTCCTGCGTGTACCAGTGCACCGCCTGCGATGCGGCCTGCAGTACTCTACGAGAATTCAGCAACCATTACAAAGAAACTCACGAAAGGATTATATGCGACCATTGTGGAAAGAGCTTTATCAAGAAAAAAACCCTAGAAGTACACATAAAacgCCACCACACCCCAGCGACCTGCCATGAGTGCAATCGCACATATGCACATTACCACGTACTAGAGAATCACTACAGAATGCACCACCCCCACCTGATCCGAGCTGACACGAGAACAGAACTCGCGTATTGTGTAGAGTGCGACAAGCAGTTCCCGAGTGTGTACAAGTACAGACGACATCTCGCCACTGCCGCTAAGCATACGCCGCCGAAACCTGTCAGGGTCCCGTGTCCGGAGTGCGGGAAGGTTTTCGCTCGGAAGATCAGGATGACGAATCATTACAAATCAGTGCACATCAACACGACGAAGCATCGCTGCGATATTTGTAACAAGACGTTTTGCTCGGCTTTCTCAGCGCGAACGCACAGACAACATGTGCACGAGAAGATTCCTATGCCGAAGAACAAGATGTGTGACATATGTGGCCGAGGATTCAGCACGAACCGCATCCTAACGAACCACCGTCGGACCCACACGGGCGAGCGACCGTACAAGTGCTCCTACTGCCCCGCCACGTTCGCGCAGCGCACCGCCATGAAGACGCACGAGAAGACGCAgcacaaacacccagacccgtCATAG
- Protein Sequence
- MRYCIKDHLRKQHSPFECKPCGKRFARYNGLWLHKKLRHSSPTPPAYCVECDKQYLDVYRYRWHLANSARHKPKKKVKIPCPSCEKVFSKKIYMTNHYDLVHLKQYRFRCEQCDKNFIRNADLVKHNRRVHEGILPPRNKICYVCGRGFTDNLPITPLSTLTITMKDGFHKTIDYEARPKTPDPETCILPEVIKQEVTDDDNDNLHFNDDSFSDNDILTIDLNKLKEINDQNHIKVKQGDKLNKQFIRKQSIRKYESKARITKLKVDLTDTRKHCTSVILTEKEIEEVLERDKVCYGYNKMTNKCRECKNAYKRVVDLRRHVTFNHMKTIPSKCSLCDIPISSWEGMSEHWRRHNAYLRCNMCGWLSHSLAAMTKHHRRVHSCVYQCTACDAACSTLREFSNHYKETHERIICDHCGKSFIKKKTLEVHIKRHHTPATCHECNRTYAHYHVLENHYRMHHPHLIRADTRTELAYCVECDKQFPSVYKYRRHLATAAKHTPPKPVRVPCPECGKVFARKIRMTNHYKSVHINTTKHRCDICNKTFCSAFSARTHRQHVHEKIPMPKNKMCDICGRGFSTNRILTNHRRTHTGERPYKCSYCPATFAQRTAMKTHEKTQHKHPDPS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -