Mfla007163.2
Basic Information
- Insect
- Mecyna flavalis
- Gene Symbol
- znf711
- Assembly
- GCA_949319885.1
- Location
- OX439414.1:8811792-8818558[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.018 1.6 10.2 1.8 2 23 57 78 56 78 0.96 2 14 0.0099 0.87 11.1 1.4 2 23 85 107 84 107 0.96 3 14 0.025 2.2 9.8 0.3 2 23 115 137 114 137 0.94 4 14 0.00017 0.015 16.6 3.5 1 23 143 165 143 165 0.98 5 14 2.6e-06 0.00023 22.3 3.2 1 23 171 193 171 193 0.98 6 14 0.0078 0.68 11.4 0.2 1 21 199 219 199 220 0.94 7 14 1.5e-05 0.0013 19.9 2.0 1 23 573 595 573 595 0.97 8 14 0.00034 0.03 15.7 1.3 1 21 602 622 602 625 0.88 9 14 0.00034 0.03 15.7 1.3 1 21 693 713 693 716 0.88 10 14 0.00034 0.03 15.7 1.3 1 21 784 804 784 807 0.88 11 14 0.00034 0.03 15.7 1.3 1 21 875 895 875 898 0.88 12 14 0.48 43 5.8 0.6 1 23 906 929 906 929 0.94 13 14 0.00031 0.028 15.8 2.9 3 23 937 959 935 959 0.94 14 14 3.2e-05 0.0028 18.9 0.8 1 21 965 985 965 986 0.96
Sequence Information
- Coding Sequence
- ATGGACTCTAATATATCGTTTTTCAGTCTTCCCTTTGTGGATTCTGAATCTTCGGacctagtatttaataaaatcaaaccTCAGGAAGGGTATGAGGAAGTTCTCGCTCAGTTTCTATCCGGGGACGAGCCTTTGGAGGAGCCAGACTTAAATGGACCCACAACCCTTCACTGTGAAATATGTCGTAAGCAGTTCGACAATGCTAAGAAGTATTATGGCCATTTACGAGTCCATTCTAAGGATCGTCTTTGGAAATGTGACAAGTGTCCAGACCAGAAGTTCTCCACCAAGCAGCAGCTGATGAAGCACAGCTTGACCCACCAGCCCCTGGAGCGCGTGTGGCGCTGTCCGCAGTGCAGCATGGCATTCGAGTCACTCTGGCGCTTGCAGCAACATCTGTTCTCTACACATCTGGAGTATAGACCACACAAATGTGATAAATGTGAAAAGGCTTTTCACAAGCCGTCAGATCTTGCTAAGCATAAAAATGTCCATGATGATATAAAGAAACACGAATGCACAGTATGCAAAGTGAAATTTAAAGATAAATCTAATTTGAGTCGCCATATGCTGACACATACCAATGAAAAGCCATTTCGCTGTTGGGGCTGTGGTAACAAATTCAAACAGGTGGCATCAATGAGGAGGCATGCCAAGAATTGTGcttatgtaaaaaaaagtgaatgtgaagaaaaaaatattaaaaataatcactgTGGAATATGTGGAATGACATTTGAATGTATGAATACATTGTTAGATCACTGTGCAAGACAACACCTAAATGCACCCGAACCAGTAGTGGAAAAACCAAATCCAAATGTCCAAAATCAAACAGCAGACACAAATAGGACTGAAGATAACATTGTTGATGATATTCTCTCTGCTGAAGACGATTACTTGACAATGTCTAATCAAAACCATATATTAAACAGTTACAATGCTCCAACTGAACCAAGTATCAACACAGAGAATTTGATGCAAATTGAGTTACTTAAAGACATGAGTCAGTTGCATAGTCTTGATGATGAACTGTTCTACAACGATATAGACTTTGAAAGTTTTCAAAACAACcatatttttaatatgaacACAAATGATATGGACTATAGCCCTCaagataaaaatacagaaatacTATTTGACTTTACTGACGCAAGCCGGAGCATGGATCAAGATATAATGAATGCACTTTATCATGCTAAGCCTGATCATTTACCAGATGAACTGTTGAATGTACCAGACATAGAAAGTTTCCCTGATAAGCCAAATGATTTGTTGACTCCATCAGTTTCAGTAAATGAATGTGCTACTATATTTGAGAGTGATGTTGATCTTGAAGCAAGTGCCAACTTAGCAGCAAATTTAAATCAATTGATTGGGGAAAATAATGTTCAGTACATTTCCACAGAGGATGATGATACCTTTATTATAAGTTTGAAGAGTGAAATAGATGCAGCACAGTTAACTGACATGTTGAACATGGCAAGTGAATTAGCAGATAGCAGTAAAACATCGGATGAGCACATCACTGAAAGTACTGCTGATGCCAATGTAACAATGGCTGAGAATGTAGTAAATAATGTTGAGCCGTTGGTATTAAAAATTGAGGAAAAGGTTTCTCAGCCAAACATAGGCGAAGGCGCCATTTGTCAAAATAGTGAGGAGAAAGAGAATGTAACTGTCAAAAAAACTAAAGTGAAGAAAAaagttctttttatttgtagaaAATGTAATAAAGTGTTCAATAAGAAGGGAAACTTCAAATCACATATAGCTACGCACGAGCCGTCGCTGCGCTTGCACGCGTGCTCTGTGTGCGGCCGGCGCTTCGGCTACAAGTCGTCGCTGAACAAGCACTTCGCCGCGCAGCACCAGCCGCGCGTGCTGCCCGCGCACGCCTGCGCGCTCTGCCGCAACACCTACCGCGCCAACTGGATGGTGAGGGACCACATGTCACCAGCCGCGCGTGCTGCCCGCGCACGCCTGCGCGCTCTGCCGCAACACCTACCGCGCCAACTGGATGGTGAGGGACCACATGTGTCTGTAGCTACGCACGAGCCGTCGCTGCGCTTGCACGCGTGCTCTGTGTGCGGCCGGCGCTTCGGCTACAAGTCGTCGCTGAACAAGCACTTCGCCGCGCAGCACCAGCCGCGCGTGCTGCCCGCGCACGCCTGCGCGCTCTGCCGCAACACCTACCGCGCCAACTGGATGGTGAGGGACCACATGTCACCAGCCGCGCGTGCTGCCCGCGCACGCCTGCGCGCTCTGCCGCAACACCTACCGCGCCAACTGGATGGTGAGGGACCACATGTGTCTGTAGCTACGCACGAGCCGTCGCTGCGCTTGCACGCGTGCTCTGTGTGCGGCCGGCGCTTCGGCTACAAGTCGTCGCTGAACAAGCACTTCGCCGCGCAGCACCAGCCGCGCGTGCTGCCCGCGCACGCCTGCGCGCTCTGCCGCAACACCTACCGCGCCAACTGGATGGTGAGGGACCACATGTCACCAGCCGCGCGTGCTGCCCGCGCACGCCTGCGCGCTCTGCCGCAACACCTACCGCGCCAACTGGATGGTGAGGGACCACATGTGTCTGTAGCTACGCACGAGCCGTCGCTGCGCTTGCACGCGTGCTCTGTGTGCGGCCGGCGCTTCGGCTACAAGTCGTCGCTGAACAAGCACTTCGCCGCGCAGCACCAGCCGCGCGTGCTGCCCGCGCACGCCTGCGCGCTCTGCCGCAACACCTACCGCGCCAACTGGATGTTGAAGGAGCACATGGACCGCGACCACAGGCAGCTGCGGCCGATGGTGTGCGACAGGAAGGACTGCGGCAAGAAGTTCTACAAGAAGTGCGACCTCGTCACGCATATGAGGTACCACACGGGCGAGAAGCCCTACTCGTGCGACATCTGCAAGCGGCAGTTTCAGCAGGCCTCGCATTTGCGCCGCCACGTCCGGGCCGTCGACTGCACAAAGCAGTGA
- Protein Sequence
- MDSNISFFSLPFVDSESSDLVFNKIKPQEGYEEVLAQFLSGDEPLEEPDLNGPTTLHCEICRKQFDNAKKYYGHLRVHSKDRLWKCDKCPDQKFSTKQQLMKHSLTHQPLERVWRCPQCSMAFESLWRLQQHLFSTHLEYRPHKCDKCEKAFHKPSDLAKHKNVHDDIKKHECTVCKVKFKDKSNLSRHMLTHTNEKPFRCWGCGNKFKQVASMRRHAKNCAYVKKSECEEKNIKNNHCGICGMTFECMNTLLDHCARQHLNAPEPVVEKPNPNVQNQTADTNRTEDNIVDDILSAEDDYLTMSNQNHILNSYNAPTEPSINTENLMQIELLKDMSQLHSLDDELFYNDIDFESFQNNHIFNMNTNDMDYSPQDKNTEILFDFTDASRSMDQDIMNALYHAKPDHLPDELLNVPDIESFPDKPNDLLTPSVSVNECATIFESDVDLEASANLAANLNQLIGENNVQYISTEDDDTFIISLKSEIDAAQLTDMLNMASELADSSKTSDEHITESTADANVTMAENVVNNVEPLVLKIEEKVSQPNIGEGAICQNSEEKENVTVKKTKVKKKVLFICRKCNKVFNKKGNFKSHIATHEPSLRLHACSVCGRRFGYKSSLNKHFAAQHQPRVLPAHACALCRNTYRANWMVRDHMSPAARAARARLRALPQHLPRQLDGEGPHVSVATHEPSLRLHACSVCGRRFGYKSSLNKHFAAQHQPRVLPAHACALCRNTYRANWMVRDHMSPAARAARARLRALPQHLPRQLDGEGPHVSVATHEPSLRLHACSVCGRRFGYKSSLNKHFAAQHQPRVLPAHACALCRNTYRANWMVRDHMSPAARAARARLRALPQHLPRQLDGEGPHVSVATHEPSLRLHACSVCGRRFGYKSSLNKHFAAQHQPRVLPAHACALCRNTYRANWMLKEHMDRDHRQLRPMVCDRKDCGKKFYKKCDLVTHMRYHTGEKPYSCDICKRQFQQASHLRRHVRAVDCTKQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -