Mfla000077.1
Basic Information
- Insect
- Mecyna flavalis
- Gene Symbol
- -
- Assembly
- GCA_949319885.1
- Location
- OX439407.1:260275-261729[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 6.9e-05 0.0061 17.9 0.1 2 23 165 186 164 186 0.97 2 11 9.3e-05 0.0082 17.5 4.6 1 23 192 215 192 215 0.96 3 11 2.9e-05 0.0025 19.1 0.5 1 23 222 244 222 244 0.98 4 11 8.1e-07 7.1e-05 23.9 1.6 1 23 250 272 250 272 0.98 5 11 8.7e-06 0.00077 20.7 0.9 3 23 280 300 278 300 0.97 6 11 3.8e-05 0.0033 18.7 4.5 1 23 306 328 306 328 0.98 7 11 2.5e-05 0.0022 19.3 0.1 3 23 336 357 334 357 0.96 8 11 0.00068 0.06 14.7 0.7 2 23 363 381 362 381 0.94 9 11 0.0034 0.3 12.5 2.7 1 23 387 410 387 410 0.90 10 11 0.027 2.4 9.7 0.3 1 23 416 441 416 441 0.94 11 11 4.3e-05 0.0037 18.5 2.0 1 23 447 470 447 470 0.97
Sequence Information
- Coding Sequence
- ATGGATTCGAAGGTATGCCGGGTTTGCCTCTGTAAAACTGCTACAATTTCGGTGTTCGATGTTCAGGACGGCGTTCAGTACAGCGCTAAGATAATGCGGTGCGTCGCTGTGAGTGTGGTAGAAGACGATGGTCTACCCGACGCCATCTGCGACTGCTGTGCAGGCGAGCTAGCAGTCGCCTACAATTTCATAGAGAAGTGCGAGGCCACCGACAAGGCGCTCCGCTACTTGGACTTCGCCGATGACTTCCACGACGCTGATAATGAAACTAAGATAGTATTAGATCTTAAAACAGAGGAtgatttgaagtttgatttggatCAAGGTTATGAAAGTCGGCTTCCTGCAGTAAAAGACGAGTACTCAGAGGAACCACAACCATTGCATGTAGATTATGAAAATGCAAAGAATCATGACAGGcagcaacaaaaaatattgacatCTAAAAAATTTAGCAGGAAAAAAGTAAAACGCACCAAATCAGGACCACTACAATGTGTGATTTGTGGTCAAATAACAGCCAGTCGGTCAGCCATGGAGACTCATATGCGGACCCACACTGGTGAAAATCCATTCAGTTGTCATGTTTGTAGTAAACAGTTTAGGACTAAAGGGTCCTTGTCAAGGCATTTTGAAACGAGACACGCACACAGAGAGAGAAAGTTCACCTGTGAGACATGTGGCAGCAGCTTTTATAGAAAAAATGATATCATAATTCATATGAGAGTTCACACTGATGAGAGGCCATACTCATGTCCCTACTGCACTAAGAGCTTCCGTCAGATTACATCACTCATTCGGCATAAACGAGTACATACAGGAGAAAAACCATTTGGTTGTAATATTTGTGGCAAAAAGTTTTCTGACAAAAATTTAGTTAAGAAACACCAATCAGTTCACAGTGATGAAAAAAAGTACCAGTGCCACTTGTGTAATAAGTGTGTGAAAACTAAAAATGCTCTGAACACCCACATGATTCTGCATACAAATGAGAAGCAGATCATTTGTAGCTTTTGTGGAGTGGCATTTAACATGAAAGGGAACTTGCAGACACATATACGTAGAGTACATTCGGAGAAGTCCGGTCAATGTTCAATCTGTTCTAAAACATTTTCTGATCTGGAGGTGCACATGCGCAAACATACAGGAGAGAGGCCTTTTCTCTGTAAGTTGTGTAACCAGAGTTACGCTACCAAGCGGAGCTTGTCTCATCATATAGCCTTTAAACATGAGAATGCATCAAAATACAAGTGTTCCATAGGAGAGTGCACTCGGACATTCCCGACAGCCATGATGCTAGAATTTCACCTATTGAAACAGCATACAAACAATACACCTTATGTCTGCCAGCATTGCGCGCGAGGCTTCTTCCGCAACAGCGACCTGTCGCGCCACCTCAAAGTCAGCCACATGGAGCTGCAAGGGAAGCTTGCTTTAAAGCCTCTGGATATTTAG
- Protein Sequence
- MDSKVCRVCLCKTATISVFDVQDGVQYSAKIMRCVAVSVVEDDGLPDAICDCCAGELAVAYNFIEKCEATDKALRYLDFADDFHDADNETKIVLDLKTEDDLKFDLDQGYESRLPAVKDEYSEEPQPLHVDYENAKNHDRQQQKILTSKKFSRKKVKRTKSGPLQCVICGQITASRSAMETHMRTHTGENPFSCHVCSKQFRTKGSLSRHFETRHAHRERKFTCETCGSSFYRKNDIIIHMRVHTDERPYSCPYCTKSFRQITSLIRHKRVHTGEKPFGCNICGKKFSDKNLVKKHQSVHSDEKKYQCHLCNKCVKTKNALNTHMILHTNEKQIICSFCGVAFNMKGNLQTHIRRVHSEKSGQCSICSKTFSDLEVHMRKHTGERPFLCKLCNQSYATKRSLSHHIAFKHENASKYKCSIGECTRTFPTAMMLEFHLLKQHTNNTPYVCQHCARGFFRNSDLSRHLKVSHMELQGKLALKPLDI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00408653; iTF_00752285;
- 90% Identity
- -
- 80% Identity
- -