Basic Information

Insect: Mecyna flavalis
Gene Symbol: -
Assembly: GCA_949319885.1
Location: OX439423.1:6844269-6848219[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 8.8e-06 0.00077 20.7 1.2 1 23 156 178 156 178 0.96

2 10 7.6e-06 0.00067 20.9 2.2 2 23 184 205 183 205 0.97

3 10 4.5e-08 4e-06 27.9 0.9 1 23 208 230 208 230 0.98

4 10 3.2e-05 0.0028 18.9 0.3 1 20 236 255 236 257 0.96

5 10 9.6e-06 0.00084 20.6 2.5 2 23 268 289 267 289 0.97

6 10 0.00025 0.022 16.1 0.9 1 23 295 317 295 317 0.97

7 10 5.1e-06 0.00045 21.4 2.5 1 23 323 345 323 345 0.99

8 10 2.4e-06 0.00021 22.4 1.6 1 23 351 373 351 373 0.97

9 10 2.8e-05 0.0025 19.1 1.2 2 23 380 401 379 401 0.97

10 10 0.00077 0.068 14.6 4.6 1 23 407 430 407 430 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	8.8e-06	0.00077	20.7	1.2	1	23	156	178	156	178	0.96
2	10	7.6e-06	0.00067	20.9	2.2	2	23	184	205	183	205	0.97
3	10	4.5e-08	4e-06	27.9	0.9	1	23	208	230	208	230	0.98
4	10	3.2e-05	0.0028	18.9	0.3	1	20	236	255	236	257	0.96
5	10	9.6e-06	0.00084	20.6	2.5	2	23	268	289	267	289	0.97
6	10	0.00025	0.022	16.1	0.9	1	23	295	317	295	317	0.97
7	10	5.1e-06	0.00045	21.4	2.5	1	23	323	345	323	345	0.99
8	10	2.4e-06	0.00021	22.4	1.6	1	23	351	373	351	373	0.97
9	10	2.8e-05	0.0025	19.1	1.2	2	23	380	401	379	401	0.97
10	10	0.00077	0.068	14.6	4.6	1	23	407	430	407	430	0.97

Sequence Information

Coding Sequence: ATGTCGGCTTTATGTcttgttataaaaaaagagcCCGAAGATACCGCCCCAATAGTTCCCGACGACACCCAAAATGAAACACCTAATCCGGAATCCTCGGTCGAGACCGAATTCGTGAATATTAAAATGGAAATGGAGCTGGACACACCAAATGTAAGATTAAAGGAAGAACCAGACACTCAAGATGATTCTCCACCTGAACCAAACGTCACTCCACCACCGATGTGGTGTAATCCTATATACCAACCACGACCGAACAGTCCTCAGAAACATGGGATCACATCTCCGAGAGACTGGCATGAGCCAAGGATCGATATTAAGGAATGTTATCCACCTGAAACTATCACGTTTAACCCTCCATTGAAAATAGTAAATGATATACCCAATAATGAAAAGGCTTCTAGTAAAACTAGCCAGGTTAATAAAGAAGGCAGTCAAAACTATACGACCACACCAGATGGAAAATTCGCTTGCACACTCTGCGACAAGACCTACAGCACCAATGGAAACTTCCAACGACACTTTCTAGTCCACTCCGTAGGCCCTCTCGTCTGCCAACATTGTTCCAAGACGTTCACAACGGTCACTCTACTACAAAGGCATATCAAGATCCATGGGACGTATGACTGTGATGTATGCGGTAAGGTATTCAAAACATCTTCCAATTTATTCCAACATAAACGAGTTCATATGACAGTAAAACCTTTTAAGTGTCCGCTGTGTAGCAAAGAGTTCACAGTCCGAGCGAATTTGATGAAACATCAAGGAAAAAGCCGATGTAAACCTGACACTGGACCGATAACTtgtaaaatttgcaataaaacaTTCAAAACTGACTTCTTACTTAAAAGTCATCTTAGAAGACATAATACAGAGAAACCGTTCAACTGTGACATATGTGATATGAATTTTAAGTACAAAAGTACTGTTTTAAGACATGTACAGTTACATAACGGTATCAAACCGTACTCTTGTGAAATTTGTAAAAAATCGTTTACTCATGTAAGCTTGTTGAAACCCCATATGAGGACGCACACCGGAGAAAAACCATTTCCATGTCCCATTTGTAATAAGCCCTTTGCGCATAAACACAACATGGAAAGACATGTAATTAGACATGCTAAGGAAAAGAAAACGGTATGCGAAATTTGTAACAAGAAATTTCCTAAAGAAAGTAGATTGAAATACCATTTGCGGACACATGTTGATGAAAAGTTTTTCAAATGCATGGTTTGTCCGAAGAAATTTTCTCATAGACAGAACGTACTAAGGCATTACAGTAGGAAACATCCCAATGCGACTTACGACTGTACTGACACTGACGCGAAAGTAGCTTCTAAAGTTTGGGAAGAtgttttgaataacaaattGACGTTTAAAGATAAAACTGACGATGGTAACGATAAAAAAGACGATAGACACGTTAAAAATGAAGTGGATTCACATCCGGAAGAGATTTTGCCTGATTTAGATAGAAATTCAACCGTaaacagtaaaaataatttaagaaatacTTTGAATGAAGAAATAGATTGTGATGATAAAGAGTTTAATGTAAATTGCGAAATTAAACAAGAAATTGATTCAGACGATGAGGTTTTAGCAAAATATCAAGTTCGAGCGAAACGTGAATTTGAAAATCAAACAGAAAATAGTAACGTTAATAAGAATTTAGTTAACGATAATGAAAGTAAAGTTAATATAAATGAAGCGTTACCTAAAGATAATGGAATAAGTATGAATAATACGAAagttacaattaaaaaagaaatagtgTCAGATGAGGAAGAAATTTTACCGGATACAACAACAGATGTTACTCAGTTTAtggaaattaaaattgaaagcgagacaaattaa
Protein Sequence: MSALCLVIKKEPEDTAPIVPDDTQNETPNPESSVETEFVNIKMEMELDTPNVRLKEEPDTQDDSPPEPNVTPPPMWCNPIYQPRPNSPQKHGITSPRDWHEPRIDIKECYPPETITFNPPLKIVNDIPNNEKASSKTSQVNKEGSQNYTTTPDGKFACTLCDKTYSTNGNFQRHFLVHSVGPLVCQHCSKTFTTVTLLQRHIKIHGTYDCDVCGKVFKTSSNLFQHKRVHMTVKPFKCPLCSKEFTVRANLMKHQGKSRCKPDTGPITCKICNKTFKTDFLLKSHLRRHNTEKPFNCDICDMNFKYKSTVLRHVQLHNGIKPYSCEICKKSFTHVSLLKPHMRTHTGEKPFPCPICNKPFAHKHNMERHVIRHAKEKKTVCEICNKKFPKESRLKYHLRTHVDEKFFKCMVCPKKFSHRQNVLRHYSRKHPNATYDCTDTDAKVASKVWEDVLNNKLTFKDKTDDGNDKKDDRHVKNEVDSHPEEILPDLDRNSTVNSKNNLRNTLNEEIDCDDKEFNVNCEIKQEIDSDDEVLAKYQVRAKREFENQTENSNVNKNLVNDNESKVNINEALPKDNGISMNNTKVTIKKEIVSDEEEILPDTTTDVTQFMEIKIESETN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -