Basic Information

Insect: Mecyna flavalis
Gene Symbol: -
Assembly: GCA_949319885.1
Location: OX439421.1:7368418-7376990[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 3.5e-06 0.00031 21.9 0.3 2 23 119 141 118 141 0.94

2 14 0.0045 0.4 12.1 2.6 2 23 149 171 148 171 0.94

3 14 0.00056 0.05 15.0 3.5 2 23 179 201 178 201 0.90

4 14 0.0043 0.38 12.2 0.6 3 23 210 231 209 231 0.95

5 14 0.0095 0.83 11.1 0.3 2 23 238 260 237 260 0.94

6 14 0.0037 0.32 12.4 0.1 1 23 286 309 286 309 0.94

7 14 5.2e-06 0.00046 21.4 0.7 2 23 315 337 315 337 0.97

8 14 0.00027 0.024 16.0 0.8 2 23 353 375 352 375 0.93

9 14 7.8e-05 0.0069 17.7 3.8 3 23 384 405 382 405 0.96

10 14 2.3e-06 0.0002 22.5 0.8 2 23 411 433 411 433 0.97

11 14 0.018 1.6 10.3 3.8 2 23 441 463 440 463 0.94

12 14 8e-06 0.0007 20.8 2.0 1 23 469 491 469 491 0.98

13 14 0.00028 0.025 15.9 0.5 1 23 496 519 496 519 0.98

14 14 0.044 3.8 9.0 0.1 2 21 528 547 528 548 0.93

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	3.5e-06	0.00031	21.9	0.3	2	23	119	141	118	141	0.94
2	14	0.0045	0.4	12.1	2.6	2	23	149	171	148	171	0.94
3	14	0.00056	0.05	15.0	3.5	2	23	179	201	178	201	0.90
4	14	0.0043	0.38	12.2	0.6	3	23	210	231	209	231	0.95
5	14	0.0095	0.83	11.1	0.3	2	23	238	260	237	260	0.94
6	14	0.0037	0.32	12.4	0.1	1	23	286	309	286	309	0.94
7	14	5.2e-06	0.00046	21.4	0.7	2	23	315	337	315	337	0.97
8	14	0.00027	0.024	16.0	0.8	2	23	353	375	352	375	0.93
9	14	7.8e-05	0.0069	17.7	3.8	3	23	384	405	382	405	0.96
10	14	2.3e-06	0.0002	22.5	0.8	2	23	411	433	411	433	0.97
11	14	0.018	1.6	10.3	3.8	2	23	441	463	440	463	0.94
12	14	8e-06	0.0007	20.8	2.0	1	23	469	491	469	491	0.98
13	14	0.00028	0.025	15.9	0.5	1	23	496	519	496	519	0.98
14	14	0.044	3.8	9.0	0.1	2	21	528	547	528	548	0.93

Sequence Information

Coding Sequence: ATGGAAACAGAACAGGTTTTTATCAAAACAGAAATAAACATAGATGTCGAAGTCACTTCTTACGTTGAACCTGTTGAAAATGATACACATATTGAGGAAAAAACTAACTGCAATTTACGTGACAAATCAGATTGTAAAATGAACGTAGACATAAAAAAAGCATCAGACTGCCCTAACACTTTTACACTTGACATAGCACCTGTTAAATTAGAAAATGTTACTTACAATGAAACGGAAACCAATGTTGAAACTTTACAAGACAAATCTGAATATAACGAAGAAACTACAACGATAGAACAAAGAAAGATAGAATTTGAAGGCAAGGTATACGAGAATGGGAAAATTAATAGAGTGCAATGTCCAGAATGTGATAATACGTTTAAGAATAGGGCTAATTTGAAAGCGCACCTGAAGTTCGTGCATTCAACTGAGGAAGATGTCGTTGAGTGCGATCAGTGTTTCCGTACGTTCAAGTCGATTCAACATTTGAGGTCTCATAAGAGTTCAGTCCATATAGAAGACAGTGCAGAGATAGTCTGCTCGCACTGCCCCAAGTCGTTCCCGAACAAGAAGAAGCTGGCAAACCATGTGTTCTACTGCCACCCGCAGCCAGAGGAGGGAGCTGACTGCGCGCTCTGCGGGAAGAGCTTCCTCACCAAGTACAGGCTGAAGATCCACCTAAAACAAGTGCACCCATCGGGGCAGACGGTGCGGTGTGCGCAGTGCCTGAAAGAGTTCAAGAACGACATGCTTCTGCAGAGACACGTCAAGTGGGCGCACCCGCCGGACGGGCTGCAGTACCGCTGCCAGAGACACGTCAAGGTCAAGTGGGCGCACCCGCCGGACGAGCTGCGGTACCGCTGCCAGgtTTGCAATCGCATGTTACCGTCAATAGATGGGTACAAGCGTCACATGGCAGCGGTCCATGGTTCGCGTCTCGAGCGTTGCTCAATCTGTACCAAGACGTTCAAGACTGGAGGCAGTCTGAACAGACATATGGCGACTGTTCATAGTGAAGCCAAGGTGGAGAGGAAGAAGTACCCGCCTGGGGAGATTCCGTGTAGTCAGTGCGATAAGAAGTTTAGTACTAATACTGGTTTGTCATGGCATTTTGAGAAGTTCCATTCAGAGAATAAGCTGGAGATGGCGTGTCAGCTCTGCAGCAAGGAATTCTGTGACCACAACAACCTTAAGAGACACATGGAAACTGTGCACTCCATACAGaGTGCAACCTGTGACATCTGCTTCAAGACATACAAAAGCCCGATGAACTTACAAAGGCACATACGGATCACCCACGCTCCCCCAGAAGCGGCCAAAGTCTGTGAAATCTGCAACAAAACGTTCAAGTGCTCGATGCATCTCAAAATACACAACAACGTAGTGCATTCCAAAGAAGGAGACTTCCCCTGCAACGTGTGCAATAAAGTATTCTCATCGAAGAAATATATGATCAAACATTCCAAGACGCATAATAGTAAAGAGTATCCGTGTACAATATGTGTTAAGTTGTTCAAATCGATGAACGATGTGAAGAGACATATACGGAGAGTGCATATGAACAGTGATACGAGTGATAACGTTTGTTCTAAGTGTGGTGTTAGTTTTGTTGGTGACGGTGAACTACATTCGCATATAATGCATTGTGGGAATGAGGTACAGGTCAAGGTGGAGGTCAATAGTGATGAAGGGTAA
Protein Sequence: METEQVFIKTEINIDVEVTSYVEPVENDTHIEEKTNCNLRDKSDCKMNVDIKKASDCPNTFTLDIAPVKLENVTYNETETNVETLQDKSEYNEETTTIEQRKIEFEGKVYENGKINRVQCPECDNTFKNRANLKAHLKFVHSTEEDVVECDQCFRTFKSIQHLRSHKSSVHIEDSAEIVCSHCPKSFPNKKKLANHVFYCHPQPEEGADCALCGKSFLTKYRLKIHLKQVHPSGQTVRCAQCLKEFKNDMLLQRHVKWAHPPDGLQYRCQRHVKVKWAHPPDELRYRCQVCNRMLPSIDGYKRHMAAVHGSRLERCSICTKTFKTGGSLNRHMATVHSEAKVERKKYPPGEIPCSQCDKKFSTNTGLSWHFEKFHSENKLEMACQLCSKEFCDHNNLKRHMETVHSIQSATCDICFKTYKSPMNLQRHIRITHAPPEAAKVCEICNKTFKCSMHLKIHNNVVHSKEGDFPCNVCNKVFSSKKYMIKHSKTHNSKEYPCTICVKLFKSMNDVKRHIRRVHMNSDTSDNVCSKCGVSFVGDGELHSHIMHCGNEVQVKVEVNSDEG

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -