Mfla012688.1
Basic Information
- Insect
- Mecyna flavalis
- Gene Symbol
- -
- Assembly
- GCA_949319885.1
- Location
- OX439422.1:5447729-5451293[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 26 0.3 26 6.4 0.3 1 23 60 82 60 82 0.95 2 26 0.77 68 5.1 0.1 3 23 108 129 106 129 0.94 3 26 0.0003 0.026 15.9 1.5 1 23 151 173 151 173 0.99 4 26 0.0048 0.43 12.0 4.6 1 20 177 196 177 199 0.94 5 26 0.00014 0.012 16.9 0.1 1 23 204 227 204 227 0.96 6 26 0.025 2.2 9.8 1.2 1 23 233 256 233 256 0.96 7 26 7.7 6.8e+02 2.0 0.1 1 15 262 276 262 279 0.85 8 26 0.39 34 6.1 0.1 1 23 312 334 312 334 0.95 9 26 5 4.4e+02 2.6 0.1 2 23 358 380 357 380 0.93 10 26 0.062 5.5 8.6 2.6 1 23 402 424 402 424 0.96 11 26 0.0022 0.19 13.1 0.2 3 23 430 450 429 450 0.95 12 26 0.0064 0.56 11.7 0.8 1 23 459 482 459 482 0.93 13 26 0.017 1.5 10.3 0.5 1 23 488 511 488 511 0.97 14 26 0.043 3.8 9.1 1.6 1 23 517 540 517 540 0.96 15 26 5.6e-05 0.005 18.1 0.6 1 23 546 568 546 568 0.97 16 26 3.9e-06 0.00035 21.8 0.6 1 23 574 596 574 596 0.99 17 26 2.8 2.5e+02 3.4 1.3 1 23 706 729 706 729 0.94 18 26 0.49 43 5.7 0.4 2 23 752 774 751 774 0.96 19 26 0.00097 0.085 14.2 1.3 1 23 796 818 796 818 0.98 20 26 0.00032 0.028 15.7 0.4 1 23 822 844 822 844 0.98 21 26 1.4 1.2e+02 4.3 0.8 1 23 849 872 849 872 0.92 22 26 0.0012 0.1 14.0 1.4 1 23 878 901 878 901 0.95 23 26 0.24 21 6.7 2.6 1 23 908 931 908 931 0.93 24 26 0.001 0.09 14.2 3.4 1 23 937 959 937 959 0.96 25 26 1.4e-06 0.00012 23.2 1.0 1 23 965 987 965 987 0.99 26 26 1e-05 0.0009 20.5 4.1 1 23 993 1015 993 1016 0.96
Sequence Information
- Coding Sequence
- ATGAAAAAGAGTGAAATGGGTTTCTTTTTTATAGGACCAGAAGACATTCCAACGGAGAAGGGACTCTCTGTTAAGATAAAATGGAAGAGGAAACGCAGAGTCGATGAAGACAAAGCCAACGCTGCTTTGATCCTGCAGTATTCGAATGCAGTGGCATTTAGGTGCCAACGTGGGAAGTTCATGTGTGCTTATTGCCAAAATATCTGCCCCAGTATATCGGAGTTGAGAATACATTCAATTATACACGATAAACTCGATGTCTTCGAGAATCCAGACATCAGAATTTCTTTTCCACTTAGAGTTGATATTACTGACTTAGCATGTACCATATGTAATGAAACAGTACTTACAATAGCAGATTTAAAGACTCACTTAAGTAAAGATCACGAGAAACCAATTAATTCTGAATATAGCGATGGTGTTATACCGTTTATTCTCAGTGAAAAAGAGTTTAAGTGCGTCCACTGTGGAGTTACCTTCGAAAGGATTTTATCTCTGTTCGTGCATATGAATAAACATTACCAGAGTCACGTGTGTCCTACTTGTGGGAAAGGTTTCTCTGGAAGGCACAAACTTCGGTCCCATTTGACATGTCACGAGTCTGGACAGTTTGCTTGCCCGAAGTGCGATCTGGTCTTTGCGAATCGTGCGTCCAAGAATAGGCACATGTCTGTAGGCCATGGGAGGAAGGAGAGATATCGATGTCCAGTCTGTGACGCGTATTTTGACTCGTACCATTCGAGGTTAAGGCATCTAGATAGAGTTCACGATCAGAAAGTGGAGTATCGATGTAGTCTCTGCCCTTCAATATTCGggTCTGCCGACCACATAATAAAATGGAAGTCGAGACGCAAGTTTAACGATCACAGGGACAATGCTGCCATAATAATTGAGTGCTCGAACGCGTGTCCGTTTAGATGGAAGCGGGGAACGTTCACCTGCGCCTTCTGTCCCCTGTCGTTCGGAGATATGAACGCAGTCAAAGAGCATACTTTAGAACACCCTAATAGGCTTGATGCGATGCGCTTTGCACGGGCCTACGATAACATTAAAATTGACGTCACGAACCTCAAATGCGTGCTGTGCGAGCAAGCGATGAAAGACGTTAATACGCTGAAAGAACATCTGTTAAACGCTCACGATAAACCGATCAAACCAGATGTTGACTCTGGCGTCACTCCTTTCATATCCGACGGAAAAGACTTCATTTGCACTCATTGCGGTCAAAGATTCGAGCTGTTCACGAAAATAAACACCCATATCAATCAGCATTATCCTAATAACATATGTTTTGAATGCGGTAAAGCGTTCTCTGCAGCGCATAGACTCAAAGCTCATCTTGTAATCCACGAGACTGCTAGCGCAACATCGGAACACAAGTGCACTAAATGTGACCAAGCGTTCGCAACTCGTGTACTAAAGAACAGTCACATTGCTTTAGTACATGGACCGGAGTACAGATACAGGTGTCCGTACTGCAAAGACACGTTCAAAGGGTACGGAGATCGGGCAAAGCATTTAAAGGTGGCGCATGGTAGGAAAGTCGAGTACCCATGCCATTTGTGTCCGGCAGTTTTTGCGATGTGCAATCAAAGAACGAAGCACATACAACAAGTACACATTCGTCTGAAGCAGTTTTACTGTTTGCTTTGCCCTTATCAGTTCGTAACAGCATCTCAGTTGAAGAACCACATGGTGAAACATGTGGGTGAAAGAAATTTCCAATGTGAGGTGTGCAAGAAGGCGTACCCGCGACTGAAGACTTTGAGAGAGCACATGCGAATACATAATAACGATAAACGATTCGTATGCGAGTTTTGCAACCACGCCTTTGTACAGAAATGTAgaAGAAAATCTCGTAACGTAGTCGATGAGGGCACGGCGCAGACTGGCACTGACTTAAAACCTGTGCTATATGACTCCATTCAAGATAATGTGGACGAGAGAGAGACACAAAGCGAGGTACGCACCGAGCAGGTGGAAGATATCAAACCAGCCGAGCTATTGGTCTCCGCGAGAGAAATGGGCGACGAAAAACGAGCCTTGTTCAGGAGGAATGTTAGTCTTATCATGGAGTCATGTTCCGCGTACCCGTTTAAGTATAGAAAGGGAACGTATCTTTGCTACTATTGCAAGAATACGTTCTTGGAACCGGAAAAGTTGAGAGAGCACAACAAAACGCAGCATGCAGACGCTCAAATCACAGCTAAGCCGAGGAAGTATGAACCTCTTAAAATGGATTTTACGGAAACCGTGTGCACATTATGCGATATAGAAATACAGGATTACAATTTTCTGAAGCAGCACTTAAAGACGTCTCACAGCGTTGTCATTGATTGTACGTATGGCGAGTGTGTGCTGCCTTACAAGTTGACTAAAGATGAGTACTCCTGTCAGATTTGCGGGAAAGGTTACGAGATGTTTCTCAGTCTTCATAAACATATGAACGTCCATTTCGGGCATTACATCTGTGAGAGATGTGGCAAGATCTTCGCCACGAAACAAAGGATGGTGAATCATGCTAGAACACACGCTCGTGGCGTCTTCCCTTGCCGGCAGTGTAAGGAAACCTTCCTATCTTACGCATCAATGCATGCACATGTCGCTAAAGTCCACAGATCGAACAAAAGATACAAATGCCCAGTTTGCGACGAAAAATTCGCATCTTACAAGCATCGTGTGAAACACTTGAGCTTGGTTCATGGGAAAAAGACTGCTGTTTTCCCCTGCTCTCTCTGCCCTAAAGTCTTTGACCTTTGTAGCAGAAGAACTACTCATATAAAGTTCCAGCATCTTCAAGAAAGGAATCACGTGTGCCACGAATGTGGTATGAAGTTTTTCTCGAATTACGAGCTACAAGAGCATTCTATTAAACATAATGGTGAGAGAATATACCAATGTGATGTGTGTAAGAAGTCGTACGCTAGGTTAAAGACGTTAAGAGAACACATGAGGATACATAATGATGATAGAAGATTTGTATGCTTTGTGTGCGGTCAGTCGTTTATACAAAATTGTAGCTTGAAGCAGCATATGAGGGTCCACCATCATATGAAGAATGATTTGTCGTCGCTTGCAATCACTTGA
- Protein Sequence
- MKKSEMGFFFIGPEDIPTEKGLSVKIKWKRKRRVDEDKANAALILQYSNAVAFRCQRGKFMCAYCQNICPSISELRIHSIIHDKLDVFENPDIRISFPLRVDITDLACTICNETVLTIADLKTHLSKDHEKPINSEYSDGVIPFILSEKEFKCVHCGVTFERILSLFVHMNKHYQSHVCPTCGKGFSGRHKLRSHLTCHESGQFACPKCDLVFANRASKNRHMSVGHGRKERYRCPVCDAYFDSYHSRLRHLDRVHDQKVEYRCSLCPSIFGSADHIIKWKSRRKFNDHRDNAAIIIECSNACPFRWKRGTFTCAFCPLSFGDMNAVKEHTLEHPNRLDAMRFARAYDNIKIDVTNLKCVLCEQAMKDVNTLKEHLLNAHDKPIKPDVDSGVTPFISDGKDFICTHCGQRFELFTKINTHINQHYPNNICFECGKAFSAAHRLKAHLVIHETASATSEHKCTKCDQAFATRVLKNSHIALVHGPEYRYRCPYCKDTFKGYGDRAKHLKVAHGRKVEYPCHLCPAVFAMCNQRTKHIQQVHIRLKQFYCLLCPYQFVTASQLKNHMVKHVGERNFQCEVCKKAYPRLKTLREHMRIHNNDKRFVCEFCNHAFVQKCRRKSRNVVDEGTAQTGTDLKPVLYDSIQDNVDERETQSEVRTEQVEDIKPAELLVSAREMGDEKRALFRRNVSLIMESCSAYPFKYRKGTYLCYYCKNTFLEPEKLREHNKTQHADAQITAKPRKYEPLKMDFTETVCTLCDIEIQDYNFLKQHLKTSHSVVIDCTYGECVLPYKLTKDEYSCQICGKGYEMFLSLHKHMNVHFGHYICERCGKIFATKQRMVNHARTHARGVFPCRQCKETFLSYASMHAHVAKVHRSNKRYKCPVCDEKFASYKHRVKHLSLVHGKKTAVFPCSLCPKVFDLCSRRTTHIKFQHLQERNHVCHECGMKFFSNYELQEHSIKHNGERIYQCDVCKKSYARLKTLREHMRIHNDDRRFVCFVCGQSFIQNCSLKQHMRVHHHMKNDLSSLAIT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -