Basic Information

Insect: Mecyna flavalis
Gene Symbol: -
Assembly: GCA_949319885.1
Location: OX439421.1:7560826-7573516[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 4e-06 0.00035 21.8 0.3 2 23 73 95 72 95 0.94

2 18 0.0051 0.45 12.0 2.6 2 23 103 125 102 125 0.94

3 18 0.00063 0.056 14.8 3.5 2 23 133 155 132 155 0.90

4 18 0.0048 0.43 12.0 0.6 3 23 164 185 163 185 0.95

5 18 0.011 0.94 11.0 0.3 2 23 192 214 191 214 0.94

6 18 0.0041 0.36 12.3 0.1 1 23 221 244 221 244 0.94

7 18 5.9e-06 0.00052 21.2 0.7 2 23 250 272 250 272 0.97

8 18 0.0093 0.82 11.2 0.5 2 23 288 310 287 310 0.93

9 18 8.8e-05 0.0077 17.5 3.8 3 23 319 340 317 340 0.96

10 18 2.6e-06 0.00023 22.3 0.8 2 23 346 368 346 368 0.97

11 18 0.02 1.8 10.1 3.8 2 23 376 398 375 398 0.94

12 18 9e-06 0.00079 20.6 2.0 1 23 404 426 404 426 0.98

13 18 0.00037 0.032 15.6 0.4 1 23 431 454 431 454 0.98

14 18 2.6e-06 0.00023 22.3 0.8 2 23 471 493 471 493 0.97

15 18 0.02 1.8 10.1 3.8 2 23 501 523 500 523 0.94

16 18 9e-06 0.00079 20.6 2.0 1 23 529 551 529 551 0.98

17 18 0.00037 0.032 15.6 0.4 1 23 556 579 556 579 0.98

18 18 0.02 1.7 10.1 0.1 2 21 588 607 588 608 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	4e-06	0.00035	21.8	0.3	2	23	73	95	72	95	0.94
2	18	0.0051	0.45	12.0	2.6	2	23	103	125	102	125	0.94
3	18	0.00063	0.056	14.8	3.5	2	23	133	155	132	155	0.90
4	18	0.0048	0.43	12.0	0.6	3	23	164	185	163	185	0.95
5	18	0.011	0.94	11.0	0.3	2	23	192	214	191	214	0.94
6	18	0.0041	0.36	12.3	0.1	1	23	221	244	221	244	0.94
7	18	5.9e-06	0.00052	21.2	0.7	2	23	250	272	250	272	0.97
8	18	0.0093	0.82	11.2	0.5	2	23	288	310	287	310	0.93
9	18	8.8e-05	0.0077	17.5	3.8	3	23	319	340	317	340	0.96
10	18	2.6e-06	0.00023	22.3	0.8	2	23	346	368	346	368	0.97
11	18	0.02	1.8	10.1	3.8	2	23	376	398	375	398	0.94
12	18	9e-06	0.00079	20.6	2.0	1	23	404	426	404	426	0.98
13	18	0.00037	0.032	15.6	0.4	1	23	431	454	431	454	0.98
14	18	2.6e-06	0.00023	22.3	0.8	2	23	471	493	471	493	0.97
15	18	0.02	1.8	10.1	3.8	2	23	501	523	500	523	0.94
16	18	9e-06	0.00079	20.6	2.0	1	23	529	551	529	551	0.98
17	18	0.00037	0.032	15.6	0.4	1	23	556	579	556	579	0.98
18	18	0.02	1.7	10.1	0.1	2	21	588	607	588	608	0.94

Sequence Information

Coding Sequence: ATGAACGTAGACATTGAAAAAGAATCGGACTGCCCAAAAACTGATACACTTGACATAGCACCTGTTAAATTAGAAAATGTAACTTACAATGAAACGGAAACCAACGTTGAAACTTCACAAGACAAATCAGAATATAACGAAGAAACTACAACGATAGAACAAAGAAAGATAGAATTTGAAGGCAAGGTATACGAGAATGGGAAAATTAATAGAGTGCAATGTCCAGAATGTGATAATACGTTTAAGAATAGGGCTAATTTGAAAGCGCACCTGAAGTTCGTGCATTCAACTGAGGAAGATGTCGTTGAGTGCGATCAGTGTTTCCGTACGTTCAAGTCGATTCAACATTTGAGGTCTCATAAGAGTTCAGTCCATATAGAAGACAGTGCGGAGATAGTTTGCTCGCACTGCCCCAAGTCGTTCCCGAACAAGAAGAAGCTGGCAAACCACGTTTTCTACTGCCACCCGCAGCCAGAGGATGGAGCCGATTGCGCGCTCTGCGGGAAGAGCTTCCTCACCAAGtacagGCTGAAGATCCACCTAAAGCAAGTGCACCCATCGGGGCAGACGGTGCGGTGTGCGCAGTGCCTGAAAGAGTTCAAGAACGACATGCTTCTGCAGAGACACGTCAAGTGGGCGCACCCGCCCGACGGGCTGCAGTACCGCTGCCAGgtTTGCAATCGCATGTTACCGTCGATAGATGGGTACAAGCGTCACATGGCAGCGGTCCATGGTTCGCGTCTCGAGCGTTGCTCAATCTGTACCAAGACGTTCAAGACTGGAGGCAGTCTGAACAGACACATGGCGACTGTTCATAGTGAGGCCAAGGTGGAGAGGAAGAAGTACCCGCCTGGGGAGATTCCGTGTAGTCAGTGCGATAAGAAGTTAAGTACTAATACTGGTTTGTCATGGCATTTTGAGAAGTTCCATTCAGAGAATAAGCTGGAGATGGCGTGTCAGCTCTGCAGCAAGGAATTCTGTGACCACAACAACCTTAAGAGACACATGGAAACTGTGCACTCCATACAGAGTGCAACCTGCGACATCTGCTTCAAGACGTACAAGAGCCCAATGAACTTACAAAGGCACATACGGATCACCCACGCTCCCCCAGAAGCGGCAAAAGTCTGTGAAATCTGCAACAAAACGTTCAAGTGCTCGATGCATCTCAAAATACACAACAACGTAGTGCATTCCAAAGAAGGAGACTTCCCCTGCAACGTGTGCAATAAAGTATTCTCATCGAAGAAATACATGATCAAACATTCCAAGACGCATAATATTAAAGAATATCCGTGTTCAATATGTGTTAAGTTGTTCAAATCTATGAACGATGTGAAGAGACATATACGGAGAGTGCATATGAACAGTGATACGAGTGATAACGTTTGTGCTAAGTGTGGGAGTGCAACCTGCGACATCTGCTTCAAGACGTACAAGAGCCCAATGAACTTACAAAGGCACATACGGATCACCCACGCTCCCCCAGAAGCGGCAAAAGTCTGTGAAATCTGCAACAAAACGTTCAAGTGCTCGATGCATCTCAAAATACACAACAACGTAGTGCATTCCAAAGAAGGAGACTTCCCCTGCAACGTGTGCAATAAAGTATTCTCATCGAAGAAATACATGATCAAACATTCCAAGACGCATAATATTAAAGAATATCCGTGTTCAATATGTGTTAAGTTGTTCAAATCTATGAACGATGTGAAGAGACATATACGGAGAGTGCATATGAACAGTGATACGAGTGATAACGTTTGTGCTAAGTGTGGGGTTAGTTTTGTTGATGACGGCGAACTGCATTCGCATATAATGCATTGTGGGAATGAAGTACAGGTCAAGGTGGAGGTGGATAGTGATGAAGGGTAA
Protein Sequence: MNVDIEKESDCPKTDTLDIAPVKLENVTYNETETNVETSQDKSEYNEETTTIEQRKIEFEGKVYENGKINRVQCPECDNTFKNRANLKAHLKFVHSTEEDVVECDQCFRTFKSIQHLRSHKSSVHIEDSAEIVCSHCPKSFPNKKKLANHVFYCHPQPEDGADCALCGKSFLTKYRLKIHLKQVHPSGQTVRCAQCLKEFKNDMLLQRHVKWAHPPDGLQYRCQVCNRMLPSIDGYKRHMAAVHGSRLERCSICTKTFKTGGSLNRHMATVHSEAKVERKKYPPGEIPCSQCDKKLSTNTGLSWHFEKFHSENKLEMACQLCSKEFCDHNNLKRHMETVHSIQSATCDICFKTYKSPMNLQRHIRITHAPPEAAKVCEICNKTFKCSMHLKIHNNVVHSKEGDFPCNVCNKVFSSKKYMIKHSKTHNIKEYPCSICVKLFKSMNDVKRHIRRVHMNSDTSDNVCAKCGSATCDICFKTYKSPMNLQRHIRITHAPPEAAKVCEICNKTFKCSMHLKIHNNVVHSKEGDFPCNVCNKVFSSKKYMIKHSKTHNIKEYPCSICVKLFKSMNDVKRHIRRVHMNSDTSDNVCAKCGVSFVDDGELHSHIMHCGNEVQVKVEVDSDEG

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -