Mfla012620.1
Basic Information
- Insect
- Mecyna flavalis
- Gene Symbol
- -
- Assembly
- GCA_949319885.1
- Location
- OX439422.1:4912082-4919358[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 27 0.0094 0.83 11.1 1.3 1 23 55 77 55 77 0.97 2 27 0.012 1 10.8 1.7 2 23 148 170 147 170 0.92 3 27 0.0017 0.15 13.5 0.1 1 23 179 202 179 203 0.93 4 27 0.00027 0.023 16.0 1.0 2 23 206 228 205 228 0.95 5 27 0.41 36 6.0 0.2 1 23 233 256 233 256 0.94 6 27 0.0001 0.0088 17.3 1.6 2 23 264 286 263 286 0.96 7 27 0.019 1.7 10.2 0.0 3 20 294 311 292 312 0.95 8 27 8.9e-05 0.0079 17.5 3.2 1 23 320 343 320 343 0.95 9 27 0.12 10 7.7 0.3 2 23 435 457 434 457 0.95 10 27 0.11 9.3 7.8 0.5 3 23 481 502 479 502 0.92 11 27 0.039 3.4 9.2 6.2 1 23 508 531 508 531 0.89 12 27 0.00035 0.031 15.6 1.8 2 23 535 557 535 557 0.94 13 27 0.0023 0.2 13.1 0.3 1 23 560 583 560 583 0.95 14 27 0.00025 0.022 16.1 0.8 1 23 588 611 588 611 0.96 15 27 0.00021 0.019 16.3 0.3 2 23 618 639 617 639 0.95 16 27 2e-05 0.0017 19.6 1.8 1 23 645 667 645 667 0.98 17 27 0.0004 0.035 15.5 1.2 1 23 673 695 673 696 0.92 18 27 0.0008 0.07 14.5 4.8 1 23 742 764 742 764 0.99 19 27 0.073 6.4 8.3 0.1 2 23 791 812 790 812 0.95 20 27 0.0026 0.23 12.9 1.6 2 23 835 857 835 857 0.89 21 27 0.0006 0.053 14.9 1.5 1 23 863 885 863 885 0.95 22 27 0.00019 0.017 16.5 1.9 2 23 890 912 889 912 0.96 23 27 0.17 15 7.2 0.1 2 23 916 938 915 938 0.94 24 27 0.00023 0.02 16.2 0.6 1 23 945 968 945 968 0.96 25 27 0.12 11 7.6 1.2 3 20 976 993 975 996 0.94 26 27 4.5e-05 0.004 18.4 0.9 1 23 1002 1024 1002 1024 0.98 27 27 0.018 1.6 10.2 5.6 2 23 1031 1052 1030 1053 0.94
Sequence Information
- Coding Sequence
- ATGGTCTTTCGGAAGCACATTACCAAAAGTTTCAAACGTTTTTACCAAACGAACTTAGCGGAATGGTTCAAAAAAATTGAGAGGAAACACGAACTTGCAAAACTGTTGAGGACCATCATATCCAGCTCGACACTCGTCCCGTTCAGGTGGCACAAGGGTAAATTCATGTGTTTCTACTGCCCCAAACATTTCGTGGGAGTAGAGGACTTCAGACAACACGTCGAATCGCACAGTGACATAAAGTTCAATGTCATCACTAAATATCTAAACACTAATCGTGTCATAAAGATCGACGTTGCAAACTTATGGTGCACGACATGCCCTTTAGAACTAGAATCTTTCGATGAATACATCGATCATTTAAATGAATGTCATGGAGGGcagtttagtaaaaaaatatcggagAAGTTTGAGCTCTTCAGGTTAGTTGAGAATGAAATGAGCTGTCTTCTGTGCGGGAAAACCTACACAAACTTCGTCCTGCTCCTAAAACATACCCATCTGAACCATGCGAACTTGGAATCCCGCTACAAGTTCCTCTGCGAAATTTGCGGACGTGCATTCGCGGACAAAGGTGCCGTCGACACTCATATAAACCAAGTCCACCACTCCCAACAGTGCAAATACTGTCCGAAGGTATTCGACACGTGCTATGCTCTCGATAAACACGTCGGGACAGTCCATAAGGTCGAGAAGTACCAATGTCCTTTCTGCTTGGAGATATTGCCTAATAGATACATGAGAAAGAGGCATTTGGCGTTAGTCCATGATTACAAGAGTGCTCAGTTGACTTGCGAAGTCTGCAACAAGATTTTTACAAGAAACAACAAGTTGCAGATGCATAAGAAACGGGTGCATATGAAAGAGAAGAATATAGCGTGTAAGCAGTGCGGTGCGGAGTTCTTTGATCTTGAGGCGTTGAAGAAGCATCAAGTGTGTCATAGTGACGTGAGAGCGTTCCAATGCGGCGTGTGTAAGAAGACGTTTCGGAGGAAGAAGTCTTATAATATGCATATATCCTACAACCACTGGGATAAAAAATTGTTAGAGATCGACGCTGCGGAAAAGCAGGTCAAAGAAGACACCATTCGCCTCCTGACCGTCATCATCGAGAGCTCAACGATGATGCCATTTCGGTGGTCGCACAACAAGTACATGTGCTTCTACTGCTGCTATTCCTTCCATGAGGTCTGCAAGCTTAGGGAGCATACCCGAGTAGAGCATGAGAACGCTAAACTATTAAACATCTTCAAACGACCTTACGCAACAACTAGCAAAGTCAAGCTGGACATCTCAGAAATATCTTGCAAAAAATGCTTGAAGACTTTAAACAGTTTGGACGAATTCTTAGACCACGTCTCTACAGCTCATGACATCAAGTTGAACAGAGAAGTCAGCAAGTCTATCTATTGCGTCAGGTTAAAAGAAGGCGAAATGAATTGCTTGGAATGCAATGAAATGTTCAAATACTTCGGTACTCTACTCTCACACGCGTACAGATATCATAACAGTCAAAACGCTTTCCTATGCGAAGTATGCGGGAAAGGATTCTCGTCCAAAACCCATGCGAAGAACCACCACCATTTCTACCATGCCGAAGCGAAATGTGAGAAGTGTCCTAAAAATTTCAAGACGAAATATCTTTTATCGGTTCACAAAGATAAAGAACATAAGACTTTTAAGTGTCCCAAATGTCCTCAGGTCTTAGCGAGTAGATATTTAAAGAAGCGACATATGGCTCTCGTCCACGATGGCTCGCAATTCAAATGTAGCGAATGTGACAAAGTATTTGTTATGAAGAATAAGTTATTGGAGCATAAGGAAAGGATTCATTTGAAGCTGAAGACGACTGTGTGTCCAATTTGTGGATTTAGGGTATTCAATAAAGAGTTGTTGAAGAGGCATATGGTTCGGCACGATGACGCTCGACCATTCGAATGTGATATTTGTAAGAAGGCTTTTCAGCGGAAGAAGACGTTAGAATATCATCGACGTATACACACGAGCGATAGAAGGCATGCGTGTCGAGCTTGTGGAAAGGCCTTTGTGCAAGTAGCCAGTCTGAAGTTGCATCAGCGCGTACACCATGCACCATCGGAAACTGCACGAACTTCTCAAATCGTCCAAATTAAAGAAAGAATACAGCGAAGAGACATCGTGCACCTACTCACTGTCATCATCGAGAACTCTACAATGATGCCGTTCCGGTTCTGGGCTCGCAACTTCAAGTGCTTCTACTGCCGCCACACCTTCACCGAGGTCTCTGATCTCCGAGCCCACACCAGAAAACACCAAAACGCTGAGCTCGCTGAAATCTTCAAGAAACACTACATGACCACCAGCAAAGTTAAATTTGACGTCACGGAAATATCTTGCAAAATCTGTTGGACTAAACTGAGAGATTTAGACGACTTTTTAAATCATGTAGCTGTTCATGACATTGAAGTGAATAAGGAAGCTAGTGCTTACACTATTTGCGTCGAGCTTAAAGATGATGAGAATACTTGTCTCGAATGCGGCAAGAGTTTCAAGCATTTCGCTACGCTAATATCTCACAATTACAGCGACCATAGTATTAGGAAGATGTTCCTTTGCAAGGTTTGCGGGAAAGACTTCGAGACTAACGTCCACGCGTTGCGTCATCTGCAGAAGCATGATTCAGAATTGAAATGCGGGAGTTGTTCCAAGACTTTTGAGACGCCACATGGTTTGCGGAAGCATTTGAATAGGGAGCATAAGCCTTTGCAATGTCCGTTGTGCCCTGAAATTTTTCTAAGCAGTTATTTCAAAAAGCGACACATGGCTATTGATCATGACGTTCAGAGCGCTCAATTCAAATGCGATGAATGCGATAAAGTGTTTATTATGAAGAGTAGACTGCTAGAGCATAAAGAAAGGCTCCATTTGAAGTTGAAGAGAGCTATTTGCTCCATATGCGGCTTTCGAGTCTACAATAACTTAATGTTAAGGAAGCATATGATTTGTCACAACGACTCGCGCCCGTTTTCGTGTCAAGTATGTGGGAAGGCGTTCCAAAGGAAGATGACTCTCGTGAGCCACGAAAAGACACATTCGAGGGATCCTCGATGTGTGTGCAATGAGTGCGGGGAAATGTTTCTGCAGATGAGCAGTTTGAGGCACCACGAGAGGAAGCACCACAGACAGGATACGGAATCGGAATCTGAGCTGGAAGCTGAAGTAGAATATTTAGATGAATAA
- Protein Sequence
- MVFRKHITKSFKRFYQTNLAEWFKKIERKHELAKLLRTIISSSTLVPFRWHKGKFMCFYCPKHFVGVEDFRQHVESHSDIKFNVITKYLNTNRVIKIDVANLWCTTCPLELESFDEYIDHLNECHGGQFSKKISEKFELFRLVENEMSCLLCGKTYTNFVLLLKHTHLNHANLESRYKFLCEICGRAFADKGAVDTHINQVHHSQQCKYCPKVFDTCYALDKHVGTVHKVEKYQCPFCLEILPNRYMRKRHLALVHDYKSAQLTCEVCNKIFTRNNKLQMHKKRVHMKEKNIACKQCGAEFFDLEALKKHQVCHSDVRAFQCGVCKKTFRRKKSYNMHISYNHWDKKLLEIDAAEKQVKEDTIRLLTVIIESSTMMPFRWSHNKYMCFYCCYSFHEVCKLREHTRVEHENAKLLNIFKRPYATTSKVKLDISEISCKKCLKTLNSLDEFLDHVSTAHDIKLNREVSKSIYCVRLKEGEMNCLECNEMFKYFGTLLSHAYRYHNSQNAFLCEVCGKGFSSKTHAKNHHHFYHAEAKCEKCPKNFKTKYLLSVHKDKEHKTFKCPKCPQVLASRYLKKRHMALVHDGSQFKCSECDKVFVMKNKLLEHKERIHLKLKTTVCPICGFRVFNKELLKRHMVRHDDARPFECDICKKAFQRKKTLEYHRRIHTSDRRHACRACGKAFVQVASLKLHQRVHHAPSETARTSQIVQIKERIQRRDIVHLLTVIIENSTMMPFRFWARNFKCFYCRHTFTEVSDLRAHTRKHQNAELAEIFKKHYMTTSKVKFDVTEISCKICWTKLRDLDDFLNHVAVHDIEVNKEASAYTICVELKDDENTCLECGKSFKHFATLISHNYSDHSIRKMFLCKVCGKDFETNVHALRHLQKHDSELKCGSCSKTFETPHGLRKHLNREHKPLQCPLCPEIFLSSYFKKRHMAIDHDVQSAQFKCDECDKVFIMKSRLLEHKERLHLKLKRAICSICGFRVYNNLMLRKHMICHNDSRPFSCQVCGKAFQRKMTLVSHEKTHSRDPRCVCNECGEMFLQMSSLRHHERKHHRQDTESESELEAEVEYLDE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -