Mmes020845.2
Basic Information
- Insect
- Mechanitis messenoides
- Gene Symbol
- RTase
- Assembly
- GCA_959347415.1
- Location
- OY365771.1:7025061-7033291[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.00047 0.044 14.9 3.4 1 23 237 259 237 259 0.98 2 12 0.00032 0.03 15.4 6.6 1 23 265 287 265 287 0.96 3 12 0.0031 0.29 12.3 6.9 1 23 293 315 293 315 0.98 4 12 0.0013 0.12 13.5 1.0 1 23 321 343 321 343 0.97 5 12 2.8e-05 0.0026 18.8 0.6 1 23 349 371 349 371 0.96 6 12 8.5e-06 0.00079 20.4 0.0 1 23 377 399 377 399 0.98 7 12 0.00039 0.036 15.2 0.3 1 23 404 426 404 426 0.96 8 12 0.011 0.99 10.6 1.2 3 23 434 456 433 456 0.90 9 12 5e-05 0.0047 18.0 0.4 1 23 549 571 549 571 0.97 10 12 0.0055 0.51 11.5 3.4 1 23 909 931 909 931 0.96 11 12 5.4e-05 0.005 17.9 4.3 1 23 941 963 941 963 0.97 12 12 3.9 3.6e+02 2.6 2.9 2 23 1198 1222 1197 1222 0.89
Sequence Information
- Coding Sequence
- ATGTGTATGCCAACGCCGAGTAATGTGTCGGGCTTCGGTTACTCGTGGGGCTTCACGAGTACCGCGGACCTGACCAAGTGTGAAGTGGAGACACCAGGCAGCCTGAGTTATACCTTGGGAAACACGgtCTCCCCGGAAACAACACTAACTGTTATGTCCCACAAAACTCCACAAGTGCAAGAGAAAGTTGGTACTATAGCAGTAGCAGTAACTAATGCAGCAACTCAAGTAACTAGAGTTGTCACTGCTGGAACACCAGGAACAGCTAGAAGGGCCATGTTTGTATTGAATGATTCCTCAACACACACTATGAACAGAGTGTCACAGCCAAACCAGACTGCAACAATACAGACCACACACCTAACTGCCAAACCATTTATGACACCAATTGGTCCCATTCAATTGACTGCAGAagaatgtaatgaaatattaatgaaacggGCTCTTCAAGCTCAAGGCATTGCCACACCTGTGATAGATGCATCTCAATTAAACCATTCCTTACTCAATGGCAGCTTGAAGAGTTTAGCTGAGGCAACAACTCAACAGTCACAAGCAGAAACAATACAAACAACCGTTCATCAACATCATTTACTTCACACTAAACAGGAGCCTGGCACAGCTAATAGTTCACCAAAAACGGTTTATTCTCAGACGGATATGATGAGCAATACAGTGATGACGATGCCTCCAGTAAAAGAGCGGCCTTACTCATGTGAAGAATGTGGCAAGTCATTTCTTCTAAAACATCATCTCACTACTCACGCGAGGGTACATACTggtgaAAGACCTCATGTTTGCGGTCATTGTGGGAAAGCATTTGCAAGAAAGCATTGTCTCAATACACATTTGCTGTTACATTCTGCTGACCGGCCATATAGATGTCATGAGTGTAAAATGGCCTTCACTCTTAAACATCATCTTGTTACCCATTCGAGAGTGCATAGCCGCGAGCGTCCGTTCGTATGCGGCGAGTGCGGGCGCGGGTTCCCTCTAAAGCGCCACCTCGTGACGCACAGCAAGTACCACGCCGGCGAGAGACCCTTCGTCTGCGGAGACTGCGGGGAGAGCTTCGCCCAGAAGGAACACTTAGTAATGCACAGCCGCTTTCACGGTTCGCTATCGCCGTTCGTGTGTCCCGACTGTGGAGTTGCCTTCGCTCGTAAGTTCCAGCTCGTCAACCACGGACGAGTGCACGGTCGAGTGCCACACGCCTGTCCCGTTTGTGGCAAGGAATTCCTACAGAAGAGGACGTTAGTCGCTCATTTaaaAATTCATACAGGTGAAGGAGCGGTGGCTTGTTTAGAATGTGGAGAAGCATTCAAATGTAAATCTGAGCTGCAAcaacatttgaaaataacGAGACATTGTCTTACTGCGTCTCAACAACAGCAACAAACTCAACAACAGCAGCAACAACAACAGCAGCAGCAACAGCAGCAACAACAACAGCAACAAGCACAACAGCAAGCGCAACAACAAGCTCAGCAGCAACAGCAGCAGCAGCAACAACAACAGCAACAACAGCAGCAACAACAGCAACAACAACAAACGACAGTCATAAAACAGGACGATTTTAAACCACAAATAGTACAAGTAATCGGTGCCGATGGACAAATTATCACCGAAAAGGCCTCACCGGGATACGCGTGTCCAGAATGTGGGTCCTGTTTTAATACTAAGGAGGCGCTGTCGCTGCACGTGCGTCTCCACGCGGGTGACCGCACGTGCGTCACCGACCTGTGCGCGCTCACCGCCGCGCTGCAGCCGGGCCTCGTGCACCACAGTGAGCatgcacacgcacacacatacacacacatgcacacacacgcacacacacgcacacacgcacgcgGGACTGGTATACAAGTTGTACCAGTTCGGCTTGTCGGACAGACTCGTATTACTAATACGGGACTATCTGACGAATCGCTCGTTCCGCTACAAAGTGGAAGGTGTGCTCTCCTCCCCTCGCCCCATCAGGGCGGGGTCCCACAGGGTTCAGTTCTCTCACCTTTCTTATATTCAATCTACACAAGCGATATACCTAGATcgcgtcctaaaattaaattagccTTGTTCGCGGATGATACCGCCATCTATACATCCTCTCGCTCGACTGAATTGATCACCGCTCGCCTTCAGTCCTACGTCAATACCTTAGGGGATTGGTTCAGGAAATGGAGAATCGAGCTGAACCCGGAGAAAATTACCGCGGTACTCTTTCGAAGGAGGTCAGATGATAAAACCAGTCGACTGCAGAAGGTGATTCAGAACAAATTTCTTCGTATTGCCACGGGGGCTCCGTGGTATTTACGAAACACAGACCTCCATAGAGACCTAGGCATACCCACCATAGCTCAATACTTTAAGGAGCTCTCTAAGAACTACTTTGATAGAGCTAAAGACCACCCCAACCCACTGGTAGTTGAGGCGACCCATTACAAACCATTCCCCAACGTTCCCCATAGGAGGAGATGTCCCAAGTCGATCCTCATCGACAAGGATGATTATACCTGCGAGGACCTAAACTGCGTGCGTTGCCTCGGCGTTCTGCCGCCGAGGAACGATAGTGTCCATACACCCATCCTAAGCATCCCTAGAACGAACGCCGCCTCAAGCCGAGACCAacctattcaaataatatcgtCCAACCCTAGTAATGTAGTCCATACTCAGGTAATAGCAACGAATCACCATATGACGACACCGCGTCCAAAGCTACACTTCTGCGTTGATTGCGGTAAAGGATTTGCGGCGAAACATGGATTATTAGCGCATCATAAAAGGCATCCAGACGGCAGTTGTACTCTCCGCACACACGTATGTGATCAGTGCGGGAAAGCGTTCTTCCAGAAGAATCACCTTATGCTACACCAACGGCAACATATGGATTTACCTCCtagaaatTCACAAGCACAACAACAAGCAACGCAACAAGCCCAACAGCAAGCAGCGCAACAAGCAGCACAGCAAGCAGCACAACAGGTAGCACAGCAGGTTCAGCAACAAGTGCAGCAGCAACAACAACAGCAGCAGCAACACCAGGTGCAGCATCAAAACCTGGAGCTAGAGCAGCAGGAACATCAGCAACCGACGCACATACAAGTGGTAACGAATCGCTCGGGTCAGGTGATCGGTAACCAGATAGTAGTGGGCACAGTGGGCGGGCGGCGCGCACTGCTGGGGTCTCCGCTGCACATAGTGGCGAGGGACGGGAAGACACTGCCGGGACATCTGCACAAGAGGCACCACTCGCACCATGCGTACGTACACATACACCACACGCCTGCCACACGCCTGCACAACAGGCGCTATGCGTACGCGTACACATACAATACGCGTCTGCCACACGCCTGCACAACAGGCGCCATGCGTACGTACACATACACAACACGTCTGCCACACGCCTGCACAACAGGCGCCATGCGTACGAACACATACACCACATGCCTGCTACACGCCTGCACAACAGGCGCCATGCGTTCGTACACATACACCACACGCCTTCACAACAGGCGCCATGCGTTCGTACACATACACCACACGCCTGCACAACAGGCGCCATGCGTTCGTACACATACACCACACGCCTGCACAACAGGCGCCATGTGTTCGTACACATACACCACACGCCTGCACAACAGGCGCCATGCGTTCGTACACATACACCACACGCCTGCACAACAGGCGCCATGCGTTCGTACACATACACCACACGCCTGCACAACAGGCGCCATGCGTTCGTACACATACACCACACGCCTGCACAACAGGCGCCATGTGTTTTGCCATGCGTTCGTACACATACACCACACGCCTGCACAACAGGCCCCATGTGTTCGTACACATACACCACACGCCTGCACAACAGGCGCCATGCGTTCGTACACATACACCACACGCCTGCACAACAGGCGCCATGTGTTCGTACACATACACCACACGCCTTCACAACACGCCTTTACaggTGATGTAAAGGAAGTCGGCGGCCTCGTTCTATCGACGGGTCGTGGTACGGCTGGACTCATCAAGTACGAAATATCAATACCTCCGCCCACCTCCGTGCTGCAAGTGCAGCAGCTGGACTGA
- Protein Sequence
- MCMPTPSNVSGFGYSWGFTSTADLTKCEVETPGSLSYTLGNTVSPETTLTVMSHKTPQVQEKVGTIAVAVTNAATQVTRVVTAGTPGTARRAMFVLNDSSTHTMNRVSQPNQTATIQTTHLTAKPFMTPIGPIQLTAEECNEILMKRALQAQGIATPVIDASQLNHSLLNGSLKSLAEATTQQSQAETIQTTVHQHHLLHTKQEPGTANSSPKTVYSQTDMMSNTVMTMPPVKERPYSCEECGKSFLLKHHLTTHARVHTGERPHVCGHCGKAFARKHCLNTHLLLHSADRPYRCHECKMAFTLKHHLVTHSRVHSRERPFVCGECGRGFPLKRHLVTHSKYHAGERPFVCGDCGESFAQKEHLVMHSRFHGSLSPFVCPDCGVAFARKFQLVNHGRVHGRVPHACPVCGKEFLQKRTLVAHLKIHTGEGAVACLECGEAFKCKSELQQHLKITRHCLTASQQQQQTQQQQQQQQQQQQQQQQQQQAQQQAQQQAQQQQQQQQQQQQQQQQQQQQQQTTVIKQDDFKPQIVQVIGADGQIITEKASPGYACPECGSCFNTKEALSLHVRLHAGDRTCVTDLCALTAALQPGLVHHSEHAHAHTYTHMHTHAHTRTHARGTGIQVVPVRLVGQTRITNTGLSDESLVPLQSGRCALLPSPHQGGVPQGSVLSPFLYSIYTSDIPRSRPKIKLALFADDTAIYTSSRSTELITARLQSYVNTLGDWFRKWRIELNPEKITAVLFRRRSDDKTSRLQKVIQNKFLRIATGAPWYLRNTDLHRDLGIPTIAQYFKELSKNYFDRAKDHPNPLVVEATHYKPFPNVPHRRRCPKSILIDKDDYTCEDLNCVRCLGVLPPRNDSVHTPILSIPRTNAASSRDQPIQIISSNPSNVVHTQVIATNHHMTTPRPKLHFCVDCGKGFAAKHGLLAHHKRHPDGSCTLRTHVCDQCGKAFFQKNHLMLHQRQHMDLPPRNSQAQQQATQQAQQQAAQQAAQQAAQQVAQQVQQQVQQQQQQQQQHQVQHQNLELEQQEHQQPTHIQVVTNRSGQVIGNQIVVGTVGGRRALLGSPLHIVARDGKTLPGHLHKRHHSHHAYVHIHHTPATRLHNRRYAYAYTYNTRLPHACTTGAMRTYTYTTRLPHACTTGAMRTNTYTTCLLHACTTGAMRSYTYTTRLHNRRHAFVHIHHTPAQQAPCVRTHTPHACTTGAMCSYTYTTRLHNRRHAFVHIHHTPAQQAPCVRTHTPHACTTGAMRSYTYTTRLHNRRHVFCHAFVHIHHTPAQQAPCVRTHTPHACTTGAMRSYTYTTRLHNRRHVFVHIHHTPSQHAFTGDVKEVGGLVLSTGRGTAGLIKYEISIPPPTSVLQVQQLD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -