Mmes001098.2


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Mechanitis messenoides
Gene Symbol
-
Assembly
GCA_959347415.1
Location
OY365759.1:9306274-9312334[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 10 0.44 41 5.6 0.2 1 23 215 238 215 238 0.95
2 10 5.1 4.7e+02 2.2 0.5 2 19 242 259 241 264 0.61
3 10 0.0025 0.23 12.6 0.3 1 23 266 289 266 289 0.97
4 10 0.00028 0.026 15.6 2.1 1 23 292 314 292 314 0.97
5 10 0.00033 0.031 15.4 0.5 2 21 319 338 319 339 0.92
6 10 1.4e-05 0.0013 19.7 0.2 1 23 358 381 358 381 0.94
7 10 4.4e-07 4.1e-05 24.4 1.3 1 23 387 409 387 409 0.97
8 10 0.00028 0.026 15.6 3.0 1 23 415 437 415 437 0.99
9 10 0.00045 0.042 15.0 0.4 1 23 443 466 443 466 0.95
10 10 0.0022 0.21 12.8 4.8 2 23 472 493 471 494 0.94

Sequence Information

Coding Sequence
ATGTCCGATGTGAGTCGCGAAGTAGTGTCGGCCTACGCAACTTATGTCACGATTAATCTTAGGGTCGGCCTCCAATTGCCTCTGGATGACCTCCGACCCGACTGCCAGTCTATGAAGCTCTATTTCGTAATAGagCCTCCAAACTTTCCACTTGACTTCGACCAAGTTTTTAACGACGCTAGCAATGTTTTCGgtaatgttgtaaaaaaaattatgtcaaaGAAGCGTTTACTTGGACTCGATTCTAATTGGTACTGGTTATGTTTTAAAGGTCTTACAGATAATTACGTTCGAATGGAAGATGCAGTTTCGTTACACCCTGAGACTGGCATATTTCAACCACTTTCTGAAATTCTGTGTAAATTATTAGGTGAACACgttgTTGATGAGATAAGTGGCATCGAAGCTGTGTGTACAGACTGTGTGGATAAATCCTTGTTATCAGCGCGCTTTTTAGAAAAGTGTCAAAATtcaacaaatgttttaaatgagaTTTTTGAAAGCCTTACACATTCATTCAATGTTGGTTTTGATACTTCtgaaaacagtaataaaacattgtatgtAGTGATTGAAAACTTAGAATCTAAACTTTTGGTTGTAACAAAACCagaagacaaaataaatattcaggaGAATGTGTTTGAATGTGAAGTATGTATGGGCAGTTTTGACACATTTCTAGATTTAAAAGCCCATAATCTGACTAACCATGGTACATTGACTTGtgataaatgttttgataCATTTGATAGTGACACAGAGTTTTCGATCCATGAGGAACAAAACCATGGTTACAAATGTCCAGAGTGTCCACAATACAGAAATACAGAAGAGAGCTTAGAAGAACATCAGACTAGATtgcacaatatttttgtttgcaaGGATTGTGGAAAACGTTGTCGAGGTTTATACAAATTGCAAATACATGAAGAAAAACATAAGTCTAGAAATTCTTGCCCAAAATGTGGAAAGTCATATACTACAAAAGAGTTTTTTGATAAACATGTAAATCTATGCATCAACAACCTTATAGACCCACATCCTATTAGAAGTAACATGGTGAAATCATACACTTGTGAAAAATGTGATAAAGCTTATAGTACACCAGGAGGCCTTAGAGTACATAATAGATTTGCTCATGGCAATGCCAAGCCCCATGAGTGTAAAGAGTGTGGAAAGAAATTTACAGCTCCCAGTTACTTGAAAGTACATATGATTAAACACACAGgagaaaaaaatttcaaatgtgaTATTTGTCATAGTAAATTTGTATCAAAGGAGGCTTTACTTTATCATACTAGACGTCACACCGGAGAAAAACCATATAGTTGCAAAATTTGCAATGAACGATTTGTAAATGCATCAGCTAGGGCTGAGCATATAAAGTTCAAACATGTTGGTCCTACTTTAATGTGTGAGATTTGTTCTCGAAAATTTGTAACAACACATTTCTTGAAACAGCACATTAGCAGACACCATGATCCTACTAGTAAGTTATATTATGGGAGAAACATGATACCACCTAATTTGCCTCTACAACAGAATatgaagaaatttattatccatagttaa
Protein Sequence
MSDVSREVVSAYATYVTINLRVGLQLPLDDLRPDCQSMKLYFVIEPPNFPLDFDQVFNDASNVFGNVVKKIMSKKRLLGLDSNWYWLCFKGLTDNYVRMEDAVSLHPETGIFQPLSEILCKLLGEHVVDEISGIEAVCTDCVDKSLLSARFLEKCQNSTNVLNEIFESLTHSFNVGFDTSENSNKTLYVVIENLESKLLVVTKPEDKINIQENVFECEVCMGSFDTFLDLKAHNLTNHGTLTCDKCFDTFDSDTEFSIHEEQNHGYKCPECPQYRNTEESLEEHQTRLHNIFVCKDCGKRCRGLYKLQIHEEKHKSRNSCPKCGKSYTTKEFFDKHVNLCINNLIDPHPIRSNMVKSYTCEKCDKAYSTPGGLRVHNRFAHGNAKPHECKECGKKFTAPSYLKVHMIKHTGEKNFKCDICHSKFVSKEALLYHTRRHTGEKPYSCKICNERFVNASARAEHIKFKHVGPTLMCEICSRKFVTTHFLKQHISRHHDPTSKLYYGRNMIPPNLPLQQNMKKFIIHS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00959665;
90% Identity
iTF_00461826;
80% Identity
iTF_00959665;