Basic Information

Insect: Mechanitis messenoides
Gene Symbol: -
Assembly: GCA_959347415.1
Location: OY365771.1:15112916-15115260[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 9.9 9.2e+02 1.3 0.1 2 17 60 75 59 76 0.87

2 11 0.00069 0.064 14.4 1.6 1 23 239 262 239 262 0.97

3 11 0.0011 0.11 13.7 0.1 2 23 289 311 288 311 0.96

4 11 4.7e-05 0.0043 18.1 0.2 1 23 334 356 334 356 0.98

5 11 0.00026 0.024 15.7 0.2 1 23 360 383 360 383 0.98

6 11 9.6e-06 0.00089 20.2 0.5 1 23 388 411 388 411 0.94

7 11 0.028 2.6 9.3 1.4 2 23 418 440 417 440 0.92

8 11 0.0056 0.52 11.5 4.4 1 23 447 470 447 470 0.98

9 11 0.00046 0.043 14.9 1.4 2 23 477 498 476 498 0.97

10 11 8.6e-07 8e-05 23.5 1.1 1 23 504 526 504 526 0.99

11 11 3e-05 0.0028 18.7 2.2 1 23 532 554 532 555 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	9.9	9.2e+02	1.3	0.1	2	17	60	75	59	76	0.87
2	11	0.00069	0.064	14.4	1.6	1	23	239	262	239	262	0.97
3	11	0.0011	0.11	13.7	0.1	2	23	289	311	288	311	0.96
4	11	4.7e-05	0.0043	18.1	0.2	1	23	334	356	334	356	0.98
5	11	0.00026	0.024	15.7	0.2	1	23	360	383	360	383	0.98
6	11	9.6e-06	0.00089	20.2	0.5	1	23	388	411	388	411	0.94
7	11	0.028	2.6	9.3	1.4	2	23	418	440	417	440	0.92
8	11	0.0056	0.52	11.5	4.4	1	23	447	470	447	470	0.98
9	11	0.00046	0.043	14.9	1.4	2	23	477	498	476	498	0.97
10	11	8.6e-07	8e-05	23.5	1.1	1	23	504	526	504	526	0.99
11	11	3e-05	0.0028	18.7	2.2	1	23	532	554	532	555	0.95

Sequence Information

Coding Sequence: ATGGAACGTACGATTATCGATACTTGTTATGGTAAATGCAGATTTTGTAACATAACTGGTAACCACAGAGATATCATGAAAGAATACAATTGGGGAGGAGTTCGTGAAGTATACTTTCACATTATTCAAgagtgttttaatttatacATTCAGACAAACAGTAATAAAGGATCCCTGATCTGTTCGTACTGTGTGCAGAAGTTACGAGACGCCAGCACTTTCCGCATGATGGTGGTTAATGCAGACATCCAGCTCAGTGACATTCTTGATGATAAACAGActgtttttgttaataCCGGACAAACATATCCTGAGCCAGAAGTAAAGACTGAAGATATTAAAGAAGAGGATTTAGTTGATCTAAACGAAGTTGATGACACTCTAGAAATAGAtgAAAGTATGTTAGAAAGAATATCATTTCCCGAAGAGTTTGTCAATGGAGAGGCAGAACTGTTGTCTAGATTCCATCACATCAAGCCATTGCCGTCTAGAACTAGTCTCAAACACATATGTAAACAATACTATAGAGAACTGGAGCTATTGAAaggaaaaaaaattaccgcCAAATCTCTGAAAAGCCTCATCAATGATCCAAATCCTTACAAATTAAcctcaaaaatatacataactgAAAAATTGGCTCATATAGAGAATGTAACAACAATTCTAGAAAATTCCAACCTCACAGCTTTCAAGACTAAAAGACGATCTGGCTTTCCTTGCTACTACTGCAGTCAAATGTTTGACAATTTTGATCATCTATCAGAGCACCAGGACACGGGCCATTGCAAGGATAACATCAAAggaattatcaataaatatccaTCTGAGAGTCTGGCAGTCTATGTTCACGTTTCAGAAATAAAATGCTCAATCTGTGGTCAAatagttacaaatataaatgaattgaagcagcatttaataagaatacacAATAAGAAGCTATACACTGGTTATGGAGACCGAGTGATaccatttaaattgttaaatggaAATGGGTATGAGTGTCAGATATGTGGTTTTAATTTCGAAACCTTTGGCTCAATAGAGCGTCATATGAACGTCCATTATCGTAACTACGTGTGTGATCAGTGCGGTGCTGGATATATCACCAAAAATAGACTTAAAGTTCATATCAAATCTTCACATATTAGAGGAATATTTCCCTGCGATATTTGCAACAAAGTCTTCAATACTCAGTACAAATTCAAAAGTCACGTTGATGTCGTGCATAAGatgattaaaaagaataaatgtgCGAAATGTCCGGAACGTTTTACGGATTACTTTGACAGACACAAACACATGGTGGAAGTCCACGGAGAGACTCCATTGAGGTATAGATGTAATGTCTGCGATATGTTGTTCAAACGACGCTATGCTTTATCCTGTCACATGAAGAGACGGCATCTGGAAGTTCGGGACATCCAGTGCAGTGTATGCCCTTACAAGTGTTACACCACCACTGAGCTAAAGGCTCATATGATCAAGCATAATGGTGAGAGGACGTACGAGTGCgttgtttgtaaaaaatctTACGCCAGGAAGAAGACTCTGAAGGAACACATGCGGATCCATAACAATGACAGGAGATTTATTTGTGTTGTCTGTGGACAGGCTTTTGTACAGAACTGCAGCTTGAAGGGACACATGAAGACTCATCACATTGACTACTTGAATAATGTATCCAGatag
Protein Sequence: MERTIIDTCYGKCRFCNITGNHRDIMKEYNWGGVREVYFHIIQECFNLYIQTNSNKGSLICSYCVQKLRDASTFRMMVVNADIQLSDILDDKQTVFVNTGQTYPEPEVKTEDIKEEDLVDLNEVDDTLEIDESMLERISFPEEFVNGEAELLSRFHHIKPLPSRTSLKHICKQYYRELELLKGKKITAKSLKSLINDPNPYKLTSKIYITEKLAHIENVTTILENSNLTAFKTKRRSGFPCYYCSQMFDNFDHLSEHQDTGHCKDNIKGIINKYPSESLAVYVHVSEIKCSICGQIVTNINELKQHLIRIHNKKLYTGYGDRVIPFKLLNGNGYECQICGFNFETFGSIERHMNVHYRNYVCDQCGAGYITKNRLKVHIKSSHIRGIFPCDICNKVFNTQYKFKSHVDVVHKMIKKNKCAKCPERFTDYFDRHKHMVEVHGETPLRYRCNVCDMLFKRRYALSCHMKRRHLEVRDIQCSVCPYKCYTTTELKAHMIKHNGERTYECVVCKKSYARKKTLKEHMRIHNNDRRFICVVCGQAFVQNCSLKGHMKTHHIDYLNNVSR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00842938;
90% Identity: iTF_00958847;
80% Identity: -