Mmes001140.1
Basic Information
- Insect
- Mechanitis messenoides
- Gene Symbol
- -
- Assembly
- GCA_959347415.1
- Location
- OY365759.1:10090548-10093251[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.0016 0.15 13.2 4.1 1 23 157 180 157 180 0.98 2 18 3.6e-05 0.0034 18.4 1.0 1 23 189 212 189 212 0.96 3 18 0.028 2.6 9.3 0.8 2 23 225 247 225 247 0.97 4 18 0.00073 0.068 14.3 1.1 1 23 256 279 256 279 0.96 5 18 3.5e-05 0.0032 18.5 1.3 1 23 291 314 291 314 0.97 6 18 3.9e-05 0.0036 18.3 0.9 2 23 342 364 341 364 0.97 7 18 0.0012 0.11 13.6 1.2 2 23 374 396 373 396 0.96 8 18 0.098 9.1 7.6 0.7 2 20 401 419 400 421 0.89 9 18 7.6e-05 0.0071 17.4 1.1 2 23 426 448 425 448 0.96 10 18 0.033 3.1 9.1 2.1 3 23 458 479 457 479 0.95 11 18 0.024 2.3 9.5 1.9 1 23 484 507 484 507 0.92 12 18 0.00025 0.023 15.8 1.3 2 23 518 540 517 540 0.97 13 18 0.034 3.2 9.0 2.9 1 23 566 589 566 589 0.93 14 18 2.7 2.5e+02 3.1 0.6 2 23 596 617 595 617 0.81 15 18 0.0035 0.33 12.1 1.6 2 23 623 644 622 644 0.97 16 18 2.1 2e+02 3.4 2.0 3 23 652 674 650 674 0.92 17 18 0.0071 0.66 11.2 0.1 1 23 710 732 710 732 0.97 18 18 0.17 15 6.9 2.0 1 23 738 761 738 761 0.96
Sequence Information
- Coding Sequence
- ATGTCAATAAATGCAACTAAAAGTGATGTCAAAGACATCAATGCTGAAAGACATGACGATGACAGGAAAGATCCAACCACTTACTTACCTGAAGAACCAATgacatatgaaattaaaactaagaagaaaaaaaaaagaaaaaaacaagaagatccttttaaagatattgAGGAAAAGGTTCCTTTAAATACACTGACTGTGTTTGATCCAACATTGGATGTAAATCCCGAGACAGTTCTGGATCCAGAAGTCAATATAAAGGTTGAAAATATAGAGGTTGAGCTAGATTTTAAtgatTTTGCAAATGATAATGGATTAATGTTAGAGGGACCTCAAAGTGAAGATAGTCAAGAACCAGCTGTAAAAATTGAGGATCAAAGTCATGAGGCAGTGCTATTAACCTTCGAAAGTATAATTCAcgacaaaaatgttttaggtTTTGGTCCAGTGTCTGCTCCAGCAACGAATTATGTTTGCAAAGTCTGCCATCTAGTCTTCCAGTCTACTAAAACACTTAGGATGCATCAGAAAAGAAAGCATAAAGTTTTCCGAAAATCTTTCAAGCATATCTGTGATTATTGTGGGATGTcatatgaacaaaaaaatagtctGGTCGCCCATATTAAGAGGAAACATGGACCAAATGCGGTCCCTGATGATGGAGAGGAAAGAACGTGTGATGTTTGTGCGTTGGTCTTCAAAGGAATGACAAGATTACGTATGCATATGAGACGTAAACACGGATCATTCGAAGAATCTTTTAAACATGTTTGCCAAGAATGTGGTCTCACATACGATAAGTATAGGAGCCTTATCGTCCACATACAAAGAAAGCATTCAAACGATAAAAAGCCAGTATTGGACACATGGTATAATTGTCCATTTTGTCCCaaagtttttacaaaaagGGAAACTTACGCCAGACACGTCCAAAGAAAACATCGAATAAGTGATGAAGATGATAAACCAGATGAAAATCCGGATGACTTAGAAAATTGTAAGAATGAGGCAACAGGTGAAGTTACGTGTAAAGAATGTCCTCTAGTCTTTTCCTCTTTAACGTTTCTCAAATTGCACATGAGGAGAAAGCACAATGCACTAAAAGAAGATTTTAGACTTAAATGTAGGATATGCAATTTGTCCTATGATAAaatagaaagtttaaaaagacATGTACGAAGGAAACATGATAAAAGTTCGTATTGCGATGTCTGCGATAAACAGTTTGAGACTAGAGAAGTATACCTCACTCACACGCACAAAAGAATTGTTCAAGAATGTTCCGTCTGCGGATTGATTTTCGCGACTAATCGAGGTTTGTGTAAACATTTACGAAGCACACACAAAATCGAACTTCCCAAGACTGTCTTCTGTGATTTATGCAACGAAAGTTTTCACGATAAACGACAACTAAAACCTCATTATATGAAAGTACACTTAAAAGCTTCCTAcacttgtattttttgtaagaaagtttttaaagCGAAAGAGAGTTACCGACGCCATGTTCTTCTCAAACATccagtaaataaacaaaatacgtCACTTCAAAAATGCGATCAATGTACCGAAAGTTTCGAAGATGAGTTTGAATTGtgcaaacatattaatatggcGCATAGGAAACAGCAGGGTGAAATAGGTCCTCCtactttaatagaaattaagaAGGAAGAAGTGGATATACTTGAAACATTCCATTGTACAAAATGTTCAGACACTTATAACAATTGGGATCaactaaaattacattacgAGCAGAACCATTTGGCCGTTACCGAAACCCAGTGCCAAATTTGCGGAGAACTAGTGCCGGGTAACGAATTACAAAAGCACATAAAAATTGTACACACCGATTCTTCAGTACGATGTAAATATTGTGAATTTCAAACTACCAATCGGGCGAGTATGACCCAACATATGTTGAGGCACAAAAACGCAACAACTCTACACTGTGATTTTGCCGACTGTAAATATAAGACATTTTATGAAGGTGCAATGGAAAAACATAAGAGGAGGCATAGAGACCAGGGAGTCAAACTACAATGTTCTCAGTGTCCCTTCCAAACCATGggcaagtatatattaaaataccatgAAGAAGCCCATGCTACGGGCAAAAAGCGGTACTCCTGTGACCAGTGTGACTACGCCACTATACTACCCGCTAACTTAGTGCAGCACCGATACAAACATTCCTCAGAGAAGAGGTTCAAATGTGAAGTTTGTCCGTTCGCTACAAAGTACAATACATCGTTGCGTTTCCAcgttaaaaagaaacattgtGATCTCCCATCATTCagttaa
- Protein Sequence
- MSINATKSDVKDINAERHDDDRKDPTTYLPEEPMTYEIKTKKKKKRKKQEDPFKDIEEKVPLNTLTVFDPTLDVNPETVLDPEVNIKVENIEVELDFNDFANDNGLMLEGPQSEDSQEPAVKIEDQSHEAVLLTFESIIHDKNVLGFGPVSAPATNYVCKVCHLVFQSTKTLRMHQKRKHKVFRKSFKHICDYCGMSYEQKNSLVAHIKRKHGPNAVPDDGEERTCDVCALVFKGMTRLRMHMRRKHGSFEESFKHVCQECGLTYDKYRSLIVHIQRKHSNDKKPVLDTWYNCPFCPKVFTKRETYARHVQRKHRISDEDDKPDENPDDLENCKNEATGEVTCKECPLVFSSLTFLKLHMRRKHNALKEDFRLKCRICNLSYDKIESLKRHVRRKHDKSSYCDVCDKQFETREVYLTHTHKRIVQECSVCGLIFATNRGLCKHLRSTHKIELPKTVFCDLCNESFHDKRQLKPHYMKVHLKASYTCIFCKKVFKAKESYRRHVLLKHPVNKQNTSLQKCDQCTESFEDEFELCKHINMAHRKQQGEIGPPTLIEIKKEEVDILETFHCTKCSDTYNNWDQLKLHYEQNHLAVTETQCQICGELVPGNELQKHIKIVHTDSSVRCKYCEFQTTNRASMTQHMLRHKNATTLHCDFADCKYKTFYEGAMEKHKRRHRDQGVKLQCSQCPFQTMGKYILKYHEEAHATGKKRYSCDQCDYATILPANLVQHRYKHSSEKRFKCEVCPFATKYNTSLRFHVKKKHCDLPSFS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01033959;
- 90% Identity
- iTF_01033959;
- 80% Identity
- iTF_00959600;