Mmes018016.1
Basic Information
- Insect
- Mechanitis messenoides
- Gene Symbol
- -
- Assembly
- GCA_959347415.1
- Location
- OY365769.1:7548621-7553964[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.073 6.8 8.0 0.1 5 23 140 158 138 158 0.94 2 11 0.00013 0.012 16.7 0.5 2 23 163 184 162 184 0.98 3 11 0.011 0.98 10.6 6.2 2 23 191 213 190 213 0.97 4 11 7.8e-05 0.0073 17.4 1.2 2 20 224 242 224 246 0.94 5 11 0.00014 0.013 16.6 0.6 1 20 251 270 251 273 0.90 6 11 0.00073 0.068 14.3 1.9 2 23 280 302 279 302 0.95 7 11 0.00036 0.033 15.3 1.1 2 21 308 327 308 328 0.93 8 11 1.2e-05 0.0011 19.9 0.1 3 23 334 354 332 354 0.96 9 11 8.5e-06 0.00079 20.4 0.5 1 23 360 382 360 382 0.97 10 11 0.00013 0.013 16.6 0.3 2 23 389 410 388 410 0.98 11 11 0.00014 0.013 16.5 1.8 1 23 416 438 416 438 0.98
Sequence Information
- Coding Sequence
- atgataaaatgtaGGGCATGCCTAAGGGATGATGGCTGTATGGTACCTTTTAATGATCAACatgttattaactttaatttacttactaacataaatgCTCAACTGTGTGATAACTTACCACAacatttgtgtttatattgCTTAGAAATAATGAAGACCTTTATTGAGTTCCgagaaaaatgtatattgtctAATTATGTGTTAATAGATAGTACAAAAAGTAAACATAATGTTGAAAAGGATGTATTAAGAGAAGACGATAGTGATgtcaaagaaattttaaaaaatgaaaatatcaaaatagaaTTCAGTTTAGACAATATAGATAGGTTGTTGGAAGAAGATCCAATTGATCAAAATGAGCATGtagattatgatttattaaacgatttaataaaaactgaaaacaaaacagGTCTCTGCAGACAAACATTTCCAGACATGAGTCTGCTTACAAGTCACCTCTCTGAACACAAGAACACCAACAAATGCAACTTGTGCTCGCAAAAGTTTTCTGATTGGCCAGCGTTGCTCTCTCACCGTCTCACTCATTtgacaaataaagaaaagagaTGTcacatatgtttaaaaaaattctataaggAAGTACATTTGGAGTACCATTACAGAAAGTTTCATACAGATGATAAAttGCAGAATTATGTTGCAACATGTTCAAAATGTAGCCAGACATTTGAAACACCAaggaatttacaaaaacacatGTGGTCAAGTCATTCtgacaaaacatttttgtgtGAACACTGCCCTAAAGTATTCAAATCTAAAAATGCAATTAAGGCACATATGCCAGTACATGATATAGGAAATAAGTTAGTGTGTGACGTCTGCGAATATACCTGCAGGTTCACgagtaatttaaaagatcatatattaagaaaacacaCACCGAAAAAAGCTTACTGTAAAAAATGTACTCGTGTCTTCTCGAGCCCAGAGAAGCTTGAAGCTCACAGGTGTGGGGAAAAGGGCACTATTTGCCCGATTTGTGGTAAAATTGGAAAAACTCCTAGACAGTTGAGTCGTCACATGGCGAGTCACGACGCTATAGCTCGGTACAAGTGCTCGCGATGTCCCAAAGCGTACAGATCCAAGAGTGCTCTGACGACTCATGGCCTCATCCACGACGGCGTGCGCTCCAAGCGCTGTGACGTCTGTCAGGCCGCCTTCTACTCCGCATCCGTCCTCATCAAGCATCGCCGGACGCACACCGgaGAAAAACCGTACGTTTGTCGAGTATGCTGTAGAGGCTTTACCGGCAACTACAATCTGAAGGTGCATATGAGAGTACACGGAGAGTATTTGATCGAGAAGAAAAAACCAAATGATGTTACTCTCAAAGATATATAA
- Protein Sequence
- MIKCRACLRDDGCMVPFNDQHVINFNLLTNINAQLCDNLPQHLCLYCLEIMKTFIEFREKCILSNYVLIDSTKSKHNVEKDVLREDDSDVKEILKNENIKIEFSLDNIDRLLEEDPIDQNEHVDYDLLNDLIKTENKTGLCRQTFPDMSLLTSHLSEHKNTNKCNLCSQKFSDWPALLSHRLTHLTNKEKRCHICLKKFYKEVHLEYHYRKFHTDDKLQNYVATCSKCSQTFETPRNLQKHMWSSHSDKTFLCEHCPKVFKSKNAIKAHMPVHDIGNKLVCDVCEYTCRFTSNLKDHILRKHTPKKAYCKKCTRVFSSPEKLEAHRCGEKGTICPICGKIGKTPRQLSRHMASHDAIARYKCSRCPKAYRSKSALTTHGLIHDGVRSKRCDVCQAAFYSASVLIKHRRTHTGEKPYVCRVCCRGFTGNYNLKVHMRVHGEYLIEKKKPNDVTLKDI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00959593;
- 90% Identity
- iTF_00959593;
- 80% Identity
- -