Basic Information

Insect: Mechanitis messenoides
Gene Symbol: -
Assembly: GCA_959347415.1
Location: OY365769.1:7486134-7489460[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.00034 0.031 15.3 0.3 1 23 65 87 65 87 0.93

2 11 0.00014 0.013 16.6 4.5 2 23 94 115 93 115 0.97

3 11 8.9e-05 0.0083 17.2 0.4 3 23 123 143 121 143 0.96

4 11 0.00022 0.021 15.9 1.4 2 23 153 174 152 174 0.94

5 11 0.001 0.094 13.9 0.1 3 23 182 202 180 202 0.94

6 11 0.0063 0.59 11.4 8.9 1 23 208 230 208 230 0.96

7 11 1.2e-09 1.1e-07 32.5 0.7 1 23 236 258 236 258 0.99

8 11 0.00012 0.011 16.8 4.3 1 23 264 286 264 286 0.99

9 11 0.00055 0.052 14.7 0.9 1 23 292 313 292 313 0.92

10 11 3.7 3.4e+02 2.6 1.9 1 23 319 341 319 341 0.95

11 11 1.7e-06 0.00016 22.6 1.4 1 23 347 369 347 369 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.00034	0.031	15.3	0.3	1	23	65	87	65	87	0.93
2	11	0.00014	0.013	16.6	4.5	2	23	94	115	93	115	0.97
3	11	8.9e-05	0.0083	17.2	0.4	3	23	123	143	121	143	0.96
4	11	0.00022	0.021	15.9	1.4	2	23	153	174	152	174	0.94
5	11	0.001	0.094	13.9	0.1	3	23	182	202	180	202	0.94
6	11	0.0063	0.59	11.4	8.9	1	23	208	230	208	230	0.96
7	11	1.2e-09	1.1e-07	32.5	0.7	1	23	236	258	236	258	0.99
8	11	0.00012	0.011	16.8	4.3	1	23	264	286	264	286	0.99
9	11	0.00055	0.052	14.7	0.9	1	23	292	313	292	313	0.92
10	11	3.7	3.4e+02	2.6	1.9	1	23	319	341	319	341	0.95
11	11	1.7e-06	0.00016	22.6	1.4	1	23	347	369	347	369	0.98

Sequence Information

Coding Sequence: ATGGATGCAAGTGATCAAAATGTTAAACAGCAATCAGACGTTAAGGTTGAGTTGAAAATTGAATATGAAGATGGTCATGatgTTGAATATTTGGATGATGATTTTTTTGATACAAACGTTGATACAGATGCAAATATTGAAACAGAGAGgGCTCACATGAAGAAATGTCTTAGTTCGGAATTGAAGAATGCGTTTCCTTGTGGTAAATGCAAGGAGACTTTCAGTCAGGAACGAGacttaaatattcattcagCGTTACACACGCAGGGAGATAAATGGACCTGCAACGAGTGTCACAAAGAATTTACcgAACGCAACAGGTTCCGTCGCCACATCCGTCGCCACATGGCGTGTTGGCGGCTCGCCTGCGACTCCTGCGATAAGACTTTTGCGGAGCCCTGCGCGCTCCGGAGACACGCGCGCGTGCACACTGGTCAGGGAAGGGAGAAGACGCTGTGCTGCGATCTGTGCGATAAACGATTCAGCGAGCGCTCGCAGCTGGTGGCTCACTCAGCGCGCCACAGCGGGGAGCGGCCGTGTGCCTGCGCCGCCTGCGGAAAGGCCTTCCCATCCGCGCGCCTGCTGGCTTCCCACGCCAGGGTACACTCCGACATCAAGCCCCACGCCTGCCTCTATTGCGACAAGAGATTCCGACACGAGTCCACGAGGAACACCCACCATCGCACCCACACCGGAGAAAAGCCCTACGTGTGCTCCGTCTGCGGGAAGACTTTCATTCAAAACTCCAACCTAAGGCTCCACATGCGTACGCACACCGGCGAAAAGCCGTACCGCTGCGACGAATGCGGCAGCAGGTTTACCTCGAGTTCTTCTCTGACGTGTCATCGTCGCACACATACGGGAGAGAAGCCCTACGAGTGTCCGGTGTGCGGGAAGAGGTTTGCCCGCACGCACATGTCGTCTCACCTGCGCGCGCACGCGGGCGTGCGTCCCTTCTCGTGCTGCGCGTGCGCTCGCGCCTTCGGCAGCGCGGCGCGCCTGCGGGACCACTGCCGCGTGCACACCGGTGAAAAACCATTCGAATGCGCAATTTGTTCGGAAAAATTTAGAAGGAAAAATTATTTGGCCAAGCATCTCCGAACgcataaaactaacaaaaatgcTAACACGATGAAAAATGGAGAAATAGTTATTCTCCAACGACGGGTGCCTTTTTTGATGGACGCCGATGttatttataccaaaaataGCAGTACCGAAAGCGATGTGAActgtgaaaatgaaaatataattttagaagcaTCTGAAGAAATTCCTTTAGAGGTGTCCGGTGAACTCATTCTGCGAGATGATGATGACGAGAACAAGGAAGTAGTGGTCGATGAcagtcaaaatataaattgtgataatgctaatatatgtattgacTCGAACGatgttaattatgtaaatgaagTGAATTTGGTGAATGAAGAAATGAATATATCGACGTCGGCATCGATGGTCGAGGAAACCACTGTGAAACTTTACAAACTGGACCAAAGCTTAGTTCAAATACAAACATCTACCGGCCAAGTCACGATCAGAAAAATTACAAGCAAAATGACTACTAacttgtaa
Protein Sequence: MDASDQNVKQQSDVKVELKIEYEDGHDVEYLDDDFFDTNVDTDANIETERAHMKKCLSSELKNAFPCGKCKETFSQERDLNIHSALHTQGDKWTCNECHKEFTERNRFRRHIRRHMACWRLACDSCDKTFAEPCALRRHARVHTGQGREKTLCCDLCDKRFSERSQLVAHSARHSGERPCACAACGKAFPSARLLASHARVHSDIKPHACLYCDKRFRHESTRNTHHRTHTGEKPYVCSVCGKTFIQNSNLRLHMRTHTGEKPYRCDECGSRFTSSSSLTCHRRTHTGEKPYECPVCGKRFARTHMSSHLRAHAGVRPFSCCACARAFGSAARLRDHCRVHTGEKPFECAICSEKFRRKNYLAKHLRTHKTNKNANTMKNGEIVILQRRVPFLMDADVIYTKNSSTESDVNCENENIILEASEEIPLEVSGELILRDDDDENKEVVVDDSQNINCDNANICIDSNDVNYVNEVNLVNEEMNISTSASMVEETTVKLYKLDQSLVQIQTSTGQVTIRKITSKMTTNL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00958829;
90% Identity: iTF_00958829;
80% Identity: -