Basic Information

Gene Symbol
stc
Assembly
GCA_959347395.1
Location
OY365751.1:7155078-7163406[-]

Transcription Factor Domain

TF Family
zf-NF-X1
Domain
zf-NF-X1 domain
PFAM
PF01422
TF Group
Zinc-Coordinating Group
Description
This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 14 2 2.7e+04 -4.3 1.6 15 19 479 483 478 483 0.81
2 14 0.066 8.9e+02 0.6 1.7 2 10 511 519 511 519 0.92
3 14 3.6e-05 0.49 11.0 18.1 4 19 527 542 525 542 0.93
4 14 6.7e-08 0.0009 19.8 14.1 1 18 578 595 578 596 0.97
5 14 0.93 1.3e+04 -3.1 0.3 8 11 601 604 600 604 0.86
6 14 2.6e-06 0.035 14.7 14.5 1 19 637 655 637 655 0.99
7 14 2.7e-06 0.036 14.7 11.8 1 19 696 718 696 718 0.88
8 14 2 2.7e+04 -4.7 1.7 6 10 748 752 748 752 0.95
9 14 0.0016 21 5.8 7.7 1 12 758 769 758 769 0.94
10 14 0.042 5.7e+02 1.3 0.3 4 10 773 779 772 780 0.93
11 14 3.7e-06 0.049 14.2 14.0 3 19 787 803 785 803 0.92
12 14 0.00053 7.2 7.3 9.2 10 18 850 858 847 859 0.92
13 14 4.5e-08 0.00061 20.3 14.1 1 17 895 913 895 919 0.85
14 14 0.0093 1.3e+02 3.3 13.4 1 19 925 948 925 948 0.87

Sequence Information

Coding Sequence
ATGTCTCAGTGGAATAATTCTTACTCTTATAATAACCAGTATCAAGCCCCTAATAACTGGAATGGGGATTATAATAACCAGTATCAAGCATATTATCCAAATAGACAATATGATGCCAACAACCAATATGTGAGCTTCAACGAATTTTTGTCTCAAATGCACATTTCGAATCCTCCAGCAAACTccgtaaattataataacacacAGTATCAAAATTATCCAAATAGTCAATACACAGAGTTGTCAAATTATCAAATTGAGTCACCAAGTCAAAATTCTCAAGCTGAATATAATGTTGGATCTAATTCAGGTAATTTTAATCGAAATGATGGGATGTATCAAGGAAATATGCAAGAACAATCAAATCCAGTATCTACAGATCAAAACTTAGCAAAAGAAGTAGTATTCAAATCAAAACTTATGCCCACTGCCACCGAGTTTGTTCCAAAACAGtctaaaagtaatgaaaaagaaCCTGAACTTAACAATACACATAAAACCccaaatgataattattctaAACCATCTAGTTCCAGTAACTGGAGAGACAGACCTCAGAACTCTCAAGCAAAAGAttcttttaattcaaattctagtaatttttatcaaagaaaTAACAGAGGTCAAGAAACAAATAATcgtaataacaaatttgattCAAAATATCGTAATCAAGAATTACATAATAGCAATAGTGAAAGTAGTAGCCATAACTCGGCTAGTTCTGTACAAAGAGACCGTACCAGTGATacaaatattgcaaataatcGTAACcgtaaatctaaaaatagaaattttgaGAACAACCAGAACTCAGATGCCAATCATCAGAATCATCACTATAATCAAGGGTACAATAACCAATCAAAATCTAAAAACCGTAATGTCAATTATAACCAAGAGCCTAATTATGATAATGTAAATGATGTACCTGATAACACCAACAGTGATGAAGGGGGCCAAACAAAATCTAGTTCTAAGTTTAGAAACAAAGAGTCTGATGCTTGTCGTACGTTCTATAATAGTGGAATACCAAAAGAAAGCCAAGATGTCAGAAATGGTAGAGGTGAAGGATCAGGCAGAAATCGAAAGTGGGCCGGCAGTCAAAGATTAAAGGCTGTAGAACGTGACAGTTTTGAAGATGAACAATATGCAAACAACTACTTTCAtgttaaagaagaaaaaaatagagaTAATATGTCAAGTCCAGCTCGAGGAAAgagtaaaaatttttcaaatacagCCAACACAGAGATGACACAACGTGAACGTCTGAGTGACCAACTGGACCGAGGAACCCTAGAGTGTCTTGTATGTTGTGAGAGAGTAAAGCAAACAGACCCTGTATGGTATTGTGGCAACTGTTACCATGTATTCCATCTACGCTGTATTAGAAAATGGGCCATGAGTAGCATGATtgAAAGTAAATGGCGTTGCCCGGCTTgccaaaatattaatcaagatATACCCACCGAGTATAGATGTATGTGTGGTGCAGTCCGGAACCCTGAATATCAGAGGGGCTCAGGGGGAGCTCATACATGTGGCAAGTCTTGTAAAAGAACTCGGACTTGTCCACATCCTTGTACATTGCTATGCCACCCGGGGCCTTGTCCCCCTTGTCAAGCTACTATCAGCAAacaatGCGGTTGCGGCGTAGAGACCCGATCAGTGCTCTGCAGTAGCAAGTTGCCGCAGGTGTGCGGAAGAGTCTGTTCCAGAAAATTAGAATGTGGGGTCCACTCCTGTACAAAAGACTGCCACGAAGGACCTTGTGACCCCTGCGAGGAAATTGTTACACAGGTGTGTCACTGCCCCGCCGAGAAGTCCCGCTCTGTCCCGTGCACTCGCTCGTCGGGCGCGCTATCGCGCTGGTCGTGCGCGGGCGCGTGCGGGCGCGTGCTGTCGTGCGGCGCGCACGTGTGCCGCGCGCCGTGCCACGAGGCCCCCTGCCCGCCCTGCCCGCTCACACCAGACAATGTACCCGCCTGCCCCTGCGGGACTACTAGgaTTAGCAAAGATCAACGTAAATCTTGTACAGACCCCATACCACTCTGCGGCAACCTCTGCACTAAACCTCTTCCATGTGGTCCAGCCGGTGACAAACACTTCTGTAAAGAAAGTTGCCATGAAGGTCCGTGTCGCGTGTGTCCTGGTACCACACTGCTGCAGTGTCGCTGCGGACACTCCAGCAGGGAGGTGGCCTGTGCTGAGCTGCCGCAGATGAACAATAACGTTCTGTGTCAGAGGAAGTGCAACAAGAAACTGTCGTGTGGTCGTCACCGCTGCCGAAGCACGTGCTGCGACGCTCAGTCTCACCGCTGTGCTGTGGTGTGCGGGCGCAGTCTGTCGTGTCAGCTGCACCGCTGTGAGGAGTTCTGTCACACTGGACACTGTGCTCCGTGCCCGAGAGTCAGTTTCTCGGAGCTCCGCTGCTCGTGCGGTCTGGAGGTGCTGTGGCCGCCCGTGCGCTGCGGCAGCAAGCCGCCCGCCTGCGCCGCGCCGTGCCCGCGCGCGCGCGCCTGCGCACACCCGCCGCACCACTCCTGCCACGCCGGGGACTGCCCGCCCTGCGTCGTGCTCACCACCAAGATGTGCTACGGGAAGCACGAGgaACGAAAAACGATACCCTGCTCTCAAGAAGAGTTCTCCTGCGGGCTGCCGTGCGGCAAGCCTCTTCCGTGCGGAAAACACACCTGTATAAAGACCTGTCACAAGGGACCCTGTGACACCGGCAAATGCACGCAGCCTTGCATGGAGAAGCGACCTCGCTGCGGGCACCCCTGCTCCGCTCCGTGCCACGCGAGCGGCGGCGGCGCCTGCCCCAGCGCCTCGCCCTGCCGCCGCCCCGTGCGCGCCGTCTGCGCCTGCGCACGACGACACGCCGAGCGGGCCTGCTGCGACAACGCACGGGACTACGACAAGATGATGAGCGCCTTGGCGGCGACCGAGCTGCAGGAAAGCGGCTCCGTGGACATATCGGAGGTGCGCCGTCCCGCAGCCGTGCTGAGGACGTTGGAGTGCGACGAAGAGTGTTTCGTGGAGGCCCGCAGCCGTCGCCTGGCGCTGGCGCTGCAGCTGCGCAACCCCGACGTGTCCGCCAAGCTGGCGCCGCGGTACGGAGACCACCTGCGCACCACCGCCGCCAGGGAACCCTCTTTTGCGCAGCAGATACACGACAAGCTCACGGAGCTCGTGCAGCTGGCCAAAAAGTCCAAGCAGAAGACCAGAGCGCATTCGTTCCCGTCCATGAATCGACAGAAGCGTCAGTTCATTCACGAACTATGTGAACACTTCGGTTGCGAGAGTGTGGCGTACGACGCGGAACCCAATAGAAATGTTGTGGCTACAGCCGATAAAGAAAAGTCGTGGCTACCCGCCATGAGTGTACTGGAGGTGTTGTCTCGCGAGGCGGGCAAGCGTCGTGTGCCGGGCCCTGTGCTGCGCGCGCCCGCTCCCGCCGCGCACGCGACCGCACCGCGCGAAGGACCCGCGCCGACTAACAAaTCATCCGGTGGATGGGCCACTCTCACTTCTACCAACGCTTGGGCGGCGCGCAGTCAGCCCAAAAAAGAAACCAAGATAGATTACTTTGACAATCCCCCAGAAAACTAA
Protein Sequence
MSQWNNSYSYNNQYQAPNNWNGDYNNQYQAYYPNRQYDANNQYVSFNEFLSQMHISNPPANSVNYNNTQYQNYPNSQYTELSNYQIESPSQNSQAEYNVGSNSGNFNRNDGMYQGNMQEQSNPVSTDQNLAKEVVFKSKLMPTATEFVPKQSKSNEKEPELNNTHKTPNDNYSKPSSSSNWRDRPQNSQAKDSFNSNSSNFYQRNNRGQETNNRNNKFDSKYRNQELHNSNSESSSHNSASSVQRDRTSDTNIANNRNRKSKNRNFENNQNSDANHQNHHYNQGYNNQSKSKNRNVNYNQEPNYDNVNDVPDNTNSDEGGQTKSSSKFRNKESDACRTFYNSGIPKESQDVRNGRGEGSGRNRKWAGSQRLKAVERDSFEDEQYANNYFHVKEEKNRDNMSSPARGKSKNFSNTANTEMTQRERLSDQLDRGTLECLVCCERVKQTDPVWYCGNCYHVFHLRCIRKWAMSSMIESKWRCPACQNINQDIPTEYRCMCGAVRNPEYQRGSGGAHTCGKSCKRTRTCPHPCTLLCHPGPCPPCQATISKQCGCGVETRSVLCSSKLPQVCGRVCSRKLECGVHSCTKDCHEGPCDPCEEIVTQVCHCPAEKSRSVPCTRSSGALSRWSCAGACGRVLSCGAHVCRAPCHEAPCPPCPLTPDNVPACPCGTTRISKDQRKSCTDPIPLCGNLCTKPLPCGPAGDKHFCKESCHEGPCRVCPGTTLLQCRCGHSSREVACAELPQMNNNVLCQRKCNKKLSCGRHRCRSTCCDAQSHRCAVVCGRSLSCQLHRCEEFCHTGHCAPCPRVSFSELRCSCGLEVLWPPVRCGSKPPACAAPCPRARACAHPPHHSCHAGDCPPCVVLTTKMCYGKHEERKTIPCSQEEFSCGLPCGKPLPCGKHTCIKTCHKGPCDTGKCTQPCMEKRPRCGHPCSAPCHASGGGACPSASPCRRPVRAVCACARRHAERACCDNARDYDKMMSALAATELQESGSVDISEVRRPAAVLRTLECDEECFVEARSRRLALALQLRNPDVSAKLAPRYGDHLRTTAAREPSFAQQIHDKLTELVQLAKKSKQKTRAHSFPSMNRQKRQFIHELCEHFGCESVAYDAEPNRNVVATADKEKSWLPAMSVLEVLSREAGKRRVPGPVLRAPAPAAHATAPREGPAPTNKSSGGWATLTSTNAWAARSQPKKETKIDYFDNPPEN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00462051;
90% Identity
iTF_00960608;
80% Identity
-