Mmaz002640.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Mechanitis mazaeus
Gene Symbol
-
Assembly
GCA_959347395.1
Location
OY365744.1:5845881-5847263[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 10 0.00055 0.049 14.7 2.1 1 23 106 129 106 129 0.95
2 10 3e-05 0.0026 18.7 2.5 3 23 138 159 136 159 0.94
3 10 0.072 6.4 8.0 5.3 2 23 167 189 166 189 0.95
4 10 2.3e-05 0.0021 19.0 0.4 2 23 197 219 196 219 0.94
5 10 0.011 0.94 10.6 8.2 1 23 226 249 226 249 0.93
6 10 0.0015 0.13 13.3 5.3 1 23 255 278 255 278 0.94
7 10 5.6e-05 0.005 17.8 0.3 2 23 286 307 285 307 0.97
8 10 0.0011 0.093 13.8 2.2 2 23 315 337 314 337 0.96
9 10 0.00015 0.013 16.5 3.5 2 23 344 366 343 366 0.94
10 10 3.7e-05 0.0032 18.4 3.9 1 23 376 398 376 398 0.97

Sequence Information

Coding Sequence
ATGGAGGACATGTATCAAGAACCAAAAGTGGAAGAGGGGATGTATTCTCCGAAGCTAGAAAACCATTTCCTTGATCCTAAAGAAGAATCCTTCAGCTCAACTATGCCAGAGAACTATGCAATACCCAAGCCTGAAGAAGGAGAGTTTGATCCACAAATAGATATGACAATACCTCGCCCTGGACCCATGCCAAATCGACCACCCACAAAGTTTGTCAGTGTCACCAGCGCTGCACTCACTGAAGAGCAAAGAGCCATGTACGAATCTGTTTTGTCAACCTGGAAGCCGATCATGTTCCCCAAACGAACCAAGAGGTATATCTGCATGAAATGCAACAAAGAATTCAAGAACTACCAGAATTTATACTTACATACAACAAGAGTTCACTCTTCCGAAGAATCGGCTGTTATTTGCGATATTTGcgacaaaacatttaaaaacaaacactaTTTGTACATGCATAGGATGAACAAACATTATTCTGAGTCAGAAAAGTGCTATTGTCAGTTTTGTCTCCAAGAGTTCCGGACGAGACGAGCTTTACACATGCACATCAAACGTATTCATCCAAACACACTTCCGGAAATCAAGTGTCCAGAATGCGGTAAGGAGTTCGCTGTTCCGTACAAGTTACGGTACCACATCGAAAACTGCCACCGTCCGGACAAAGAAAAGTACAAATGCCATATCTGTCAAAAGTTATACAAAAGTCACTTGAATCTGAACAGACATCTCCACTTCCAGCACTCGCAAGTCGAGAGACACCCGTGCGTGTTTTGTCCGATGACGTTTAAGTCGCGGCACCATATGAAGAGACACATCTTAAATATTCATCCGCCCCTCGAGTCCAAGGTCACGTGCCCGGAGTGCTTGAAGGAATTCAAGAACGACCAGTACTTAAAAGAACACATGCAAGTCCACACTTCTATGGAGAAAAAAGTCAAATGCGATCTTTGCGACAAATTCTTTCATTCAGCGGTCCGTTTAAAGAAGCACAAGAAAATTGTTCATCCAAACAAACCGAAAATAAGATGTGAAAAGTGCAATAAAGAGTTCGCCCACGCGCACTATCTAAGGCGTCATAACAATTCAGTACACGTGGAAGTAGACGAGAGCAACTATCAACACGAGTGCGACCAATGCGGGAAGAAGTTCAAAATCAAGCGGTACTTAAATAACCACTTGCAAAGGCACGAGCAGCAGCATCTGAAGCGCATCTCTCAAATGGTGAAGACAGTTATGGACGACGGAGAGGCGCCTGATAAATCGAAGCGGCGGGGAAGACCTCGAAAAGCCAGAAAAGAAATCGAATTCATCAAATGTGAGCCGGTCTCCTCCAGTACCGACTCGGAGTCCGGCGAAACAGATTCCGAGTCGGattaa
Protein Sequence
MEDMYQEPKVEEGMYSPKLENHFLDPKEESFSSTMPENYAIPKPEEGEFDPQIDMTIPRPGPMPNRPPTKFVSVTSAALTEEQRAMYESVLSTWKPIMFPKRTKRYICMKCNKEFKNYQNLYLHTTRVHSSEESAVICDICDKTFKNKHYLYMHRMNKHYSESEKCYCQFCLQEFRTRRALHMHIKRIHPNTLPEIKCPECGKEFAVPYKLRYHIENCHRPDKEKYKCHICQKLYKSHLNLNRHLHFQHSQVERHPCVFCPMTFKSRHHMKRHILNIHPPLESKVTCPECLKEFKNDQYLKEHMQVHTSMEKKVKCDLCDKFFHSAVRLKKHKKIVHPNKPKIRCEKCNKEFAHAHYLRRHNNSVHVEVDESNYQHECDQCGKKFKIKRYLNNHLQRHEQQHLKRISQMVKTVMDDGEAPDKSKRRGRPRKARKEIEFIKCEPVSSSTDSESGETDSESD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01092400;
90% Identity
iTF_00419223;
80% Identity
iTF_00960386;