Mlys000047.1
Basic Information
- Insect
- Mechanitis lysimnia
- Gene Symbol
- -
- Assembly
- GCA_036026155.1
- Location
- JAYRBX010000001.1:501713-507979[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 31 0.002 0.3 13.1 3.9 1 20 198 217 198 220 0.94 2 31 8.3e-05 0.013 17.4 0.3 2 21 261 280 260 281 0.94 3 31 1.5e-05 0.0023 19.7 0.2 3 23 308 329 306 329 0.96 4 31 7.5 1.1e+03 1.8 0.7 2 14 350 362 349 368 0.80 5 31 0.00086 0.13 14.2 0.7 1 23 380 401 380 401 0.96 6 31 0.002 0.31 13.0 0.3 1 23 421 443 421 443 0.96 7 31 6.2e-05 0.0094 17.8 2.3 2 23 483 504 482 504 0.96 8 31 0.0012 0.18 13.7 4.1 2 23 547 569 547 570 0.96 9 31 0.013 1.9 10.5 1.2 1 23 619 642 619 642 0.95 10 31 0.00023 0.034 16.0 0.2 1 23 697 719 697 719 0.97 11 31 0.015 2.3 10.3 6.1 2 23 731 752 730 752 0.96 12 31 0.084 13 7.9 1.8 2 23 764 785 763 785 0.96 13 31 0.0041 0.63 12.0 1.7 1 23 795 817 795 817 0.98 14 31 0.022 3.3 9.8 4.6 1 23 846 868 846 868 0.96 15 31 0.00076 0.12 14.4 3.4 1 23 879 901 879 901 0.98 16 31 0.0064 0.98 11.4 1.5 1 23 909 931 909 931 0.97 17 31 0.00064 0.097 14.6 0.2 2 23 951 973 950 973 0.97 18 31 0.22 33 6.6 4.0 1 23 1020 1042 1020 1042 0.97 19 31 0.00055 0.084 14.8 0.4 2 23 1053 1075 1052 1075 0.95 20 31 0.00073 0.11 14.4 0.2 2 23 1098 1119 1097 1119 0.95 21 31 0.18 28 6.9 0.3 2 20 1123 1141 1122 1142 0.93 22 31 8.1 1.2e+03 1.7 5.9 2 23 1162 1184 1161 1184 0.94 23 31 0.0023 0.36 12.8 0.2 2 23 1200 1221 1199 1221 0.95 24 31 1.7 2.6e+02 3.8 4.2 5 23 1231 1249 1228 1249 0.94 25 31 0.043 6.5 8.8 1.3 2 23 1260 1282 1259 1282 0.95 26 31 2.7 4.1e+02 3.2 6.5 2 23 1299 1317 1299 1317 0.89 27 31 0.26 40 6.4 1.2 2 21 1321 1340 1321 1341 0.93 28 31 2.5 3.8e+02 3.3 1.3 2 23 1362 1383 1362 1383 0.96 29 31 0.18 27 6.9 0.5 2 23 1390 1411 1389 1411 0.93 30 31 0.0084 1.3 11.1 0.5 2 23 1422 1444 1421 1444 0.95 31 31 1.7 2.6e+02 3.8 3.1 2 21 1482 1501 1481 1502 0.94
Sequence Information
- Coding Sequence
- ATGGCACTCAAGCTCGGAAAATGCAGACTCTGCCTCAAACTCGGCGACTTCTATTCCATCTTTACGATGGACAACAATTTACAACTTGCGGAGATGGTTATGGAATGCGCTCGAGTTAAAATATATGAAGGTGATGGACTCCCAGAAAAAATATGCAGTGAATGTATTCAAAAACTAAGCAGTGCTCACATTTTTAAACAGCAATGTGAGCGATCAGATCAAGAGCTAAGACGTAACTATGTTCCACCTCCAGGTTTCAGCTCGACTCCTCCACCACCTAATAGGCAAAGCAGTGATTCTGCATTTTTAACTCATATTGAAGTTTCCAAGCCTATGTCTTCAAATGAAAGCAAGGCATCAATTGAAAGCAAGGTCACTGCTTTGATCCGCGGCAGAAAGCGTAGCAAAGACAGCGTCGATGATGCGTCTACTAGCAGTCGATCTCACGACTTTCGACCAGGCAGTTCTAAACGTGTTGAAGAATTACGAAGATCCCAGAAAAAACCTAGGATGTCAACAAGTTACGATTCCGACTTTGATGACAGTGGGTCTTTTTATTCACCAGAAACAGATTCAGATGATCCATTACAGTACAAATGCAATCAATGTTCTAAGGCGTTCAGATCAAAGAACAGTTTGGCCGCGCATTCAAAATgtcataaaagaaaaagtgCTTTGAAGAGTGACATGAGGCCGAAACAAAATGAACCAGTGGAACCTGAGCCGATAGTTGAGACACCTAAAGTTTTAAGTGATGCTGTTGATGATGATGACAAACTTAAGTGTGAGAAATGTGGAAAAgaattcaaattgaaaataatgctAAACAGACATATGAATATCTGTGGAAAATCACCcaaaaaacaacttttagtATCATTAGAGCCTATTGATGGAGTAACTAAAGCACCCAAACTAGATTGTGAAATGTGtccaacaaaatttaaaactatagaaaatttGGAGAAGCATATGAGAATTGTACATGCTGCTGTGTTAAAAAGAGATAAAGTGTGCATGAGGaatgaaaatggaaaaatatgtGTTCCTTGCTTTTATTGTGGTCATGCttttgatgatttttatatGCATACAGCACATTTTAGCGAGTGTCCAAAGAGAGATAGTACTGCTGATTTTGAATGCCCAAtatgcaaaaaaatttttaataaatcagctTACTTCTTACATCTTAAAgcacatttttttcaaacaacaCCAAATGAACCTCAAGTGGAAcccattttaaaaaatggaaattttCAGTGCCGAATATGCAATAAGAAATTGCAAAGTCAAGAACTACTGATTAAACATTTAGCTGCTCACATGTCCAATATTGATGATGCTGATGAAGGAGGTGACGAGGAATCcagAACAAGCACTGTTGAAGACTGTGCTTCTATTAATTCTGAATATAGTACAAATACTCCCAAAGCCactttgaaatgtaaatattgtgacaagacatttaaatataaaaaagcattgtTGTCTCACGAGGAGAAGCATGTAAGAAATGAAGTCAAAATAGAAGTGTCAGAAGTAGATCAGTCCACAGATGTACTTAACGAAATAGATCAATCATTTACGCAGTATGATTCAGAATCTAGTCAAGATGACGGCGAAGACGATAATACGTGTGATATTTGCGAAAAACAATTTTCCTACAAGAGACTTCTTTTGCAACATAAAAGAACAAAGCACCACATGACTTCCGGTACAAAGAgagctaaaattaatttaaaggatTGTTCAGTTCGGTGCTTGATTTGTGACATCGAAATGAAAGTTAGTGCTATCAATGAGCATAATCAAACACATATATCTGTAAACATGAAACCTAGGAACTTATACACCTGTATTGAATGCACCCAGCAGTTTAAGAGCTGCAGCGCTTTAGCGAATCATATCAAGCTCGTGCATAGATTGAAGCAGCAGCCAATGAATTCAAGTGCGCCGACGGATCTGGCGGATTTTTGTGAAGTCGTTGTGACTAAGGCGGAACCCCTGGACGAGCTCCAGATTCACAACGGCTTTGGTGAGGTTTCCGTCAAAGATGTTAAGCCATTAGTCAACATGAGCGGATTTACTTGTCCTATTTGCAGCAAAACACTTCCTACTCTTATATCCCTCAAGAGGCATGTCAATTGGCACAACAATGTTGGAAAGAATATGGAGAAGAAACTGGAATGCTTTGTTTGTAAAGAGACTTTCCGATTTCAATGTCACTACAAACTGCACATGCGTGAACATTACAACGACACAAATCTGGACCCAGCTCTACTAACCTGCAGTATCTGTAACCGCAAAAGCAAGCACCTTCGCGCCGCCCAAGCTCACATGAATTTCCATAAACAAACTCGTTTCAAGAGTAAAGACTATGAATGCTCGATTTGCAAGAGAGTATTCCAACATCGCAAAGTTTATCTCTCACATATGGCTATCCACTACAAACGCGGTGAAAGCGCCAGTAATACGGTTGTGGGGTCTGAATTACCCAATTCTGTGGATAAGAACGTGTTCGACGGTACCCATACTTGCCATCTATGTGGAAAAGTATGCGGTTCTGAAATATCTTTGAAGCATCACGTAATCTGGCACAATTCCAAAACATCGTTATACGGCGCTCGACACCAATGTGACATTTGCAATTTGCAGTTTACTAACAAAAAACGTCTAGAACTCCACACGAGATCACATTTCGAAGATGAAAACGGTCCGTATAAGTGCCATATTTGTGGTAAAGGATATCTAGTCGAAGATTACTTTAAGAGACATGTCAAAGGTCATAATTTTGATCACCAGTCCCATCGAAAGAGGATTGAAAGACTCCGAAAAGATAAGGTCAAATGTCCTATTTGTACGCGATACTATCCGGACCTCGTGAAACTTATTCGTCATTTGCGACGAACGCACCCCGAGAGTAAGATGATCAAAGAAGATCCGGACGCTCCAGCTCCTAACTACTATTCTTGTAAACTGTGCGCGAAGGTTTTCTTAGACGAGCGTAGATTGCAATTCCACGAAGAAGCTCACCTACGAAAACCCGAGTTCTTCAAATGTAAGTTTTGTGGTAAAAAGACTATTTCCTTAAAGAATCACAGACTTCATATAAAGGGTCATTTAACTCAGAAATACATTGATAATCCCTTGAAATGTAGCAATTGTGAGGAAACATTTACCAGAGGCTATGATTTACAATATCACCTTCGGGACGCCCACAACATCAACGAGACCTGGATCGCTGAGCGCGGCGAACAGACCCTGGACGGACCGCTGAAGGAGCTGCAATGCTCTATCTGCTACAAAGTGTTGGCCAGCAAAGGTAACTTCGAGCGACACATCGACTACCACAACTCGCTCAGATGCAATTATTGTTTCGAATATTTCAGTAGCTCCAGATTTTTGGAGGGACATCTTGCCTTCAGTTGTGATAAAAAGAGACTTCTTGGTGATACAGAAATTTATCCCAGAAAAGTGAAGTGCCATATTTGTTATAAGGCTTTCCATTTACAAGTGAAATTAGATTGTCATTTGCGAACGCAACACGATATAAGAACGTTCAAAGAAGCTCGCGAAAGTAAAAAGGAAATAGTGTgcgaatattgttttaaagtctTCGAAAATGAGTACGCTCTTAGCACCCACAAGATCTACCACAGAACAGTCGGCTATTACGGCTGCATATATTGCAATCGAAAATTTAATACGATGACTTTGTACAGGAAGCACAAAAACCATCACTTCTCTCAACTTAACGTGGACAATCCTACAAAATGCGAACACTGTGACGAAACGTTCATAGCGTTCAGAAAGATGATTTATCACATGAGGGATGTACATGGCGATAATAAGGAGTGGATAGTATTGCCTAAAGAGTCTATAGAGGAAAAATGCAATATTTGTCATAAAACATTCTTCAATCTTCATAGACATTTAGATTATCATGAAGAGAATAGATGTCAAAAATGCGGGGAATACTTCTTCTCTCGAGCGGACTTTGACAATCATCTGTGTGCTATCGATAGTGATGAAGAAGTAACCGAAATTAGTAGTAATGGTATCCGGCCTGTGTACGAAGAGTGCACTTTCTGCTTCAAACCCGTCACTAAGAAAAACTCAAAGAGACTACATGTCCAAATACATCGAGGATCCGGGTCTATATCCTGTCGCTTCTGCCCtcttaaattcaaaacaatggATGCATTTAATATTCACGCGTTTTCCCACAGaagcagaaaatataaaaaaaaacctatcaaATGTCGTAAATGTGGAGAACAGTTCGTGAAGTATGGTCCTTTCATAAGACATATGAAGTTTGTTCATAAATCCTTAAAGAAGCTTCACTATAGAGCAATAGTTATGCCTGAAAAGTGCGTAGTATGTAATGGGGATTTTCCTAATCTTCATAATCACTATCGAGCGCATTTGCAAAATCAGTGCCTTCAGTGTCTAAAATACTTCACATCATCTAAAATGTTTTCAACCCATCAATGTGATAAGGAGGACGATGACCCATCAAAAGTGTTCACATGTGACGCTAACTTGCTCGAGTTGATTAATTCCTATGTACCTAAAGATGAAAAAGACGATGAAAAGTATTACGGATACGAGGAAGAATGTGATGAAGAGGGAGAACAGAAAATAGAACTTGGAAAAAGAGAGGTTCCTGATATCCCATCACAAGATGAAGACAGTCAAAATTCTATCGATATTGATGAAGGAAACATACATGCATTAGTGCATGCGCCTATTATATCTGATGTTCTATCGCTGTATAATAAGAAGTAtgataaaaaaagcaatagtaAAACTAATGTTAGTGGTAATGTTGTGGTTCTAACCGATGACGATTCGGTTGGCTTAGAATCCAATGGAACAGCTGTTATAACTATTGATGACTAG
- Protein Sequence
- MALKLGKCRLCLKLGDFYSIFTMDNNLQLAEMVMECARVKIYEGDGLPEKICSECIQKLSSAHIFKQQCERSDQELRRNYVPPPGFSSTPPPPNRQSSDSAFLTHIEVSKPMSSNESKASIESKVTALIRGRKRSKDSVDDASTSSRSHDFRPGSSKRVEELRRSQKKPRMSTSYDSDFDDSGSFYSPETDSDDPLQYKCNQCSKAFRSKNSLAAHSKCHKRKSALKSDMRPKQNEPVEPEPIVETPKVLSDAVDDDDKLKCEKCGKEFKLKIMLNRHMNICGKSPKKQLLVSLEPIDGVTKAPKLDCEMCPTKFKTIENLEKHMRIVHAAVLKRDKVCMRNENGKICVPCFYCGHAFDDFYMHTAHFSECPKRDSTADFECPICKKIFNKSAYFLHLKAHFFQTTPNEPQVEPILKNGNFQCRICNKKLQSQELLIKHLAAHMSNIDDADEGGDEESRTSTVEDCASINSEYSTNTPKATLKCKYCDKTFKYKKALLSHEEKHVRNEVKIEVSEVDQSTDVLNEIDQSFTQYDSESSQDDGEDDNTCDICEKQFSYKRLLLQHKRTKHHMTSGTKRAKINLKDCSVRCLICDIEMKVSAINEHNQTHISVNMKPRNLYTCIECTQQFKSCSALANHIKLVHRLKQQPMNSSAPTDLADFCEVVVTKAEPLDELQIHNGFGEVSVKDVKPLVNMSGFTCPICSKTLPTLISLKRHVNWHNNVGKNMEKKLECFVCKETFRFQCHYKLHMREHYNDTNLDPALLTCSICNRKSKHLRAAQAHMNFHKQTRFKSKDYECSICKRVFQHRKVYLSHMAIHYKRGESASNTVVGSELPNSVDKNVFDGTHTCHLCGKVCGSEISLKHHVIWHNSKTSLYGARHQCDICNLQFTNKKRLELHTRSHFEDENGPYKCHICGKGYLVEDYFKRHVKGHNFDHQSHRKRIERLRKDKVKCPICTRYYPDLVKLIRHLRRTHPESKMIKEDPDAPAPNYYSCKLCAKVFLDERRLQFHEEAHLRKPEFFKCKFCGKKTISLKNHRLHIKGHLTQKYIDNPLKCSNCEETFTRGYDLQYHLRDAHNINETWIAERGEQTLDGPLKELQCSICYKVLASKGNFERHIDYHNSLRCNYCFEYFSSSRFLEGHLAFSCDKKRLLGDTEIYPRKVKCHICYKAFHLQVKLDCHLRTQHDIRTFKEARESKKEIVCEYCFKVFENEYALSTHKIYHRTVGYYGCIYCNRKFNTMTLYRKHKNHHFSQLNVDNPTKCEHCDETFIAFRKMIYHMRDVHGDNKEWIVLPKESIEEKCNICHKTFFNLHRHLDYHEENRCQKCGEYFFSRADFDNHLCAIDSDEEVTEISSNGIRPVYEECTFCFKPVTKKNSKRLHVQIHRGSGSISCRFCPLKFKTMDAFNIHAFSHRSRKYKKKPIKCRKCGEQFVKYGPFIRHMKFVHKSLKKLHYRAIVMPEKCVVCNGDFPNLHNHYRAHLQNQCLQCLKYFTSSKMFSTHQCDKEDDDPSKVFTCDANLLELINSYVPKDEKDDEKYYGYEEECDEEGEQKIELGKREVPDIPSQDEDSQNSIDIDEGNIHALVHAPIISDVLSLYNKKYDKKSNSKTNVSGNVVVLTDDDSVGLESNGTAVITIDD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00960330;
- 90% Identity
- iTF_00959570;
- 80% Identity
- -