Mpay016693.1
Basic Information
- Insect
- Meandrusa payeni
- Gene Symbol
- -
- Assembly
- GCA_029286785.1
- Location
- JAGSMX010000027.1:12062651-12071518[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 0.18 15 6.7 0.1 3 23 115 135 113 135 0.96 2 16 0.38 30 5.7 0.4 2 23 139 161 138 161 0.93 3 16 0.048 3.9 8.6 0.8 3 23 390 411 389 411 0.97 4 16 0.0015 0.12 13.3 0.1 1 20 419 438 419 440 0.95 5 16 0.005 0.4 11.7 0.5 2 23 450 471 449 471 0.94 6 16 0.017 1.3 10.0 2.8 1 23 519 542 519 542 0.94 7 16 0.53 43 5.3 0.1 3 23 619 640 617 640 0.85 8 16 2.4e-05 0.0019 19.0 1.1 1 23 674 696 674 696 0.97 9 16 7.5e-05 0.006 17.4 2.0 1 23 703 725 703 725 0.98 10 16 8.1e-05 0.0065 17.3 2.3 1 23 730 752 730 752 0.96 11 16 0.00019 0.015 16.1 1.6 1 23 758 780 758 780 0.98 12 16 2.2e-06 0.00018 22.2 1.5 1 23 786 808 786 808 0.97 13 16 0.0015 0.12 13.3 1.1 2 23 815 836 815 836 0.98 14 16 0.00036 0.029 15.3 0.9 2 23 844 866 843 866 0.97 15 16 0.0029 0.24 12.4 2.7 1 23 871 893 871 893 0.98 16 16 0.75 60 4.8 5.9 1 23 899 922 899 922 0.96
Sequence Information
- Coding Sequence
- ATGACATCTGATGATTCAGATGATGAGCCCCTGTCAGTTTTAGcagcagaaaaaaaattacatccaGAAAAATTTCCGGAACCTGTTGCCCAAGAAGCCAGTATAACGCctagaaaaagaaaaaggaaatcCCTTACCCCGAAAAAATTGGGTATCACCATTAAAATAAGAAAGCAAAGGAACTTACCGCCGCCTCCTATCATAGAACGACCTGCGGATGTTTGGCTGTATATGAAAGACCTAAATCCTGCAGGACCCTATAGTTGCCTCCTATGTACAGATTGGTTCATCAATCGATCCAAAATGATTATGCATTACGTTTTAAACCATAAAAAAGATTTCTGTGGCATCTGCAGatatTTTGTTCCGGACAGAGAGTCATGGCAGGCCCACATCAAATTTCATATACCATGGCCTTGCTCCCAGTGTATTGCAAACTTTCCCAATCAAATAACATTACGCCACCATCTCAGCAGTATGCATAAACTTGTGCACTGTCGCCTTTGTCACTTTCGTCTACCCGATGACGATCAATATAATACTCACTTGTTCCAAAAGCACAATGTAACAAATGTGCTCTGTAAAGATGAGGAAGTGCTTTGGGATTTTGATTATGAGGGTACTAcgaaatttttatgtttactctGTTCAAAATCAAACAATCTTAGCTCAACATTCTTCAAACATTACATGGGTTTCCATCATTTTACCATAAAATGCCTGACAACTCTGATATCTGGTAAAGATCCACCATTTACTGTTAATGGCGCTGATGTCAGTGCTCACTTCATTGATGGGCAGTTACAGGGAGAAATTCGTTATGGTTATGTTGATTTGGACAAAACACCCTACAATGCCCTAAAACAATTAGATGTAAGCAATGaagcttataattttttaaaaactgaGATAAAACAAGAAGTTGGTTGCAATGCTGCCGAAAGTGGGCCCAATTCTAATAAAGAGAGTAAAACTGCAGAGTATATGCATAAAAATTATAAGGGCGATGAAGATTTTGATGTGACTCTCACGGAACTCATAGTTTTAGAGAAGTGCTACTTTGATTATGTAACTCGTACTCTAAGCGATATAAATTGTAATCAAATGCCATTGAATTCTCTCATAGAATATGAAGATGGTAAATCTGATATCATAATGGATGTTGACTGTCCATTATGCAAATCAAAGTATGAAAATGCTCAAACTTTCACAATGCACATGAACAAAATGCATTGTGTTAGGTTAGTGCCGTTATATTCGTGCAGAATTTGTGCAACAACATTCGATACACAGAGTGAGCTAGAAACACACACAGGTATTGAGCTGGGAAACTTTGAAGACTTATGGATCTGTCAGTTTTGCGATAAGGAGTTTGATACCAGGGATGCCACAAGGAAGCATCTAACAGAGCATTGGGAGATAATGGAGTATGACAATTGTTTCAGTCCACATTTGGGTTTTAAATGTAGATTCTGTCCAACGCTGTTCTGGAATGAAACGGAGCGTGAACAGCACCAAGTGAGAGTTCATTTCTCAAAGTATAAGGATCAAttctataaatgtgaaagttgttCTGAAATATTCAGCGATAAGGTGTGgttcattcatcatcatttagAAAAACACTTTGCAAACAAGATGACAACATATCTCTTAAAGTGCTGCCTTTGTTGCATTGTCCTACCGAATGTTGATGAAATGAGGAACCATTTTCAAGATGAGCACCCGGAGGCTAGGAAGGTTTACTGTTCCCTGGACTCCTGTCAGTACAAGCCACTTAGTCACAGGAAGTCATTTAAATTGCATGTGAAGACGATCCACAATCCAGCGGCGCGCGCGGACAAGTCTGTGAACTGCGCGGTGTGCGGGCGGGAGTTCGCCAGCTCGCGGGCATGCGGCGCGCACATGGCCCAGGTGCACGGGCCTGGCAAGTTCAAGTGCAAGCTGTGTAGGGACGTGCTACACACAATGGATGAGAGGAAGCTGCATTATCTCCTGCGGCATCCGGGTCGACACCCGTACGAGTGCGCGGATTGCGGCAAGTCCTTCCAGTACAAATCATCTCTATATATGCATCGCCAGGACCACATACCCAACAAGCAGACCTTCACATGCAACTATTGCTCCAAGGTGTTCATGAAAAAGGACTCGTTCCGCGAGCACGTGCAGATCCACGAGGGTCCGCGGCACGCGTGCTCGTACTGCCCCATGCGCTTTGTGCAGCGCTCCAACATGCTGCGGCACGAGCGGCGGCACACGGGCGAGCGGCCCTACGCCTGCCCGCACTGCCCGCGCACCTTCGCCGACAAGGGCGCCTGCAACTCACATGTCAGaaCACATTCCAAGGAAACGTCATTCGCATGCCTCTACTGCGGTCAGACTTTCGTCCAGAAATCAAAGCTCACTTATCATATCAGAAAACACACTGGAGAGAACTTAGAAACATGTCCCGTGTGCTCAAAATTGTTCACCAGCGGTTGTGCGTTGCGCGAACACATGAAGATACACGTGGCGAAGAAGGAGCTGGTTAAATGTCCTTTGTGCgACAAGAAATACCAGGACGAGCGCTACATGCTGCGTCACTTGCGCACGACGCACACGGGCGCGCAGCACACGTGTCCGCTGTGCCACAAGCTGCTCACCAGCCCGGCCGGCCTGCGACACCATGTGCTCACGCACAGCGCCATCAACATGTATCACTGCAAATGTTGTCCAAAATCCTACGCTATCAAGAGGACTATGATACGACATCTCCGCAGGCGTCACGGTCTGAAAGGAACGGAAATCAACATAAAGGATTTCTTCAAACGCCTCGACCCCAGAGAATGCCAACTGGGCTTGGATGAAGAGACAATGCTCAATATTTTCGGACCACCGAAGAGAGTGATGACCGATCTCTTACTAACCGACTACGTGAATCTAGCCAATACTTATAAAAGAAACAGGCAACTTGATACTGAAAACGATGGACGTAGCGGAGAGGAGAACGGAGATGATAAGAATGAAGAGGAAGAACAATCTGACATGGAGACTGaatacaaatatcaaaataactttGGCAATCAGAATCAATCGAGTGACATTAACAAAGACATAGAGAATGTATGTATTAAACAGGAAACGATTACAACCGAAGTTGAATTGGAACCAACGGATTTTGTTAGCGTTAAAATTGAACCTTACGACGAAAATGATGCAATGTAG
- Protein Sequence
- MTSDDSDDEPLSVLAAEKKLHPEKFPEPVAQEASITPRKRKRKSLTPKKLGITIKIRKQRNLPPPPIIERPADVWLYMKDLNPAGPYSCLLCTDWFINRSKMIMHYVLNHKKDFCGICRYFVPDRESWQAHIKFHIPWPCSQCIANFPNQITLRHHLSSMHKLVHCRLCHFRLPDDDQYNTHLFQKHNVTNVLCKDEEVLWDFDYEGTTKFLCLLCSKSNNLSSTFFKHYMGFHHFTIKCLTTLISGKDPPFTVNGADVSAHFIDGQLQGEIRYGYVDLDKTPYNALKQLDVSNEAYNFLKTEIKQEVGCNAAESGPNSNKESKTAEYMHKNYKGDEDFDVTLTELIVLEKCYFDYVTRTLSDINCNQMPLNSLIEYEDGKSDIIMDVDCPLCKSKYENAQTFTMHMNKMHCVRLVPLYSCRICATTFDTQSELETHTGIELGNFEDLWICQFCDKEFDTRDATRKHLTEHWEIMEYDNCFSPHLGFKCRFCPTLFWNETEREQHQVRVHFSKYKDQFYKCESCSEIFSDKVWFIHHHLEKHFANKMTTYLLKCCLCCIVLPNVDEMRNHFQDEHPEARKVYCSLDSCQYKPLSHRKSFKLHVKTIHNPAARADKSVNCAVCGREFASSRACGAHMAQVHGPGKFKCKLCRDVLHTMDERKLHYLLRHPGRHPYECADCGKSFQYKSSLYMHRQDHIPNKQTFTCNYCSKVFMKKDSFREHVQIHEGPRHACSYCPMRFVQRSNMLRHERRHTGERPYACPHCPRTFADKGACNSHVRTHSKETSFACLYCGQTFVQKSKLTYHIRKHTGENLETCPVCSKLFTSGCALREHMKIHVAKKELVKCPLCDKKYQDERYMLRHLRTTHTGAQHTCPLCHKLLTSPAGLRHHVLTHSAINMYHCKCCPKSYAIKRTMIRHLRRRHGLKGTEINIKDFFKRLDPRECQLGLDEETMLNIFGPPKRVMTDLLLTDYVNLANTYKRNRQLDTENDGRSGEENGDDKNEEEEQSDMETEYKYQNNFGNQNQSSDINKDIENVCIKQETITTEVELEPTDFVSVKIEPYDENDAM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01154495;
- 90% Identity
- -
- 80% Identity
- -