Mpay004945.1
Basic Information
- Insect
- Meandrusa payeni
- Gene Symbol
- -
- Assembly
- GCA_029286785.1
- Location
- JAGSMX010000007.1:1128581-1139481[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.015 1.2 10.2 3.0 1 23 82 104 82 104 0.96 2 11 0.00015 0.012 16.5 3.3 2 23 112 133 111 133 0.95 3 11 0.0083 0.67 11.0 0.5 1 23 137 159 137 159 0.97 4 11 2.4 1.9e+02 3.2 0.6 1 8 164 171 164 174 0.87 5 11 0.0094 0.76 10.8 0.1 2 21 240 259 239 264 0.91 6 11 4.8e-05 0.0039 18.0 1.4 3 23 274 295 274 295 0.98 7 11 4.2 3.4e+02 2.4 0.3 3 23 316 337 314 337 0.90 8 11 5.4e-06 0.00044 21.0 0.5 1 23 348 370 348 370 0.98 9 11 3.7e-06 0.0003 21.5 1.4 1 23 376 398 376 398 0.99 10 11 0.68 55 4.9 4.9 1 23 404 426 404 426 0.96 11 11 3.6e-05 0.0029 18.4 0.2 1 23 432 455 432 455 0.98
Sequence Information
- Coding Sequence
- ATGGTGCCACCGGGATTAACGGAAGTCATAAAGCCGAAAGCAAAAAGGGGCAGACCGAGGAAAATAGTAGACGCTTCAATGGTGGTTAAGAAACCGAAACCCAGAAGAACAAGAAACACGGGTGGAGTGCCTGATGATGAGTTAGATATTGAGGAATATGTCACGGTTATAAAACTATcgGTGGAAGAGCAAATAGAAGAGATAACGAGCCGCCAGCTCTCGTCCAACTTCCAGAACGCGCCTTTCAAATGCGACCTGTGTTTCAAGGGTTTCATAGACACGCACGCGTGGAAACATCACGTGGGAAAACACGATCCAAGTGCGGGCGAGTTGCAATGCTCCATCTGCAAGTTCCGTTTCAAGACCAAGCGGACACTACAGAAGCACGTCACCAACCACGAGAAGAAGTACGCCTGTAAGGCCTGCCCATACGTCTCTAAAACGAGAACCCAAGCGAAGCAGCACCAGAGGTGGCACAAAGGCGTCACTTACAAGTGTCAGTATTGCGATGAAATATCTACGTTGTTTGTGTCTGTGGGATACTCATACGCACCGCAAAAAACGGTTTTGCGGAAGTGCGCGAGCGTCGACGACGCAGCGCACGCAACAGTCACGCGCCTCTTGTTTACCGCGAAGCCCGTGTCGCTCTCTCGCAATTCCCTCGCGCACGGACGTAGGAGAGGAATTAAAGCGGAGCACAGTAAAGACGGGGGTCTGTACTGTGAGCAGTGTGACGTCAAGTTCGTGTCGGTGGAGGCGTGGAAGCGGCACATGGTTACCTCGGTCAAACACACGCAGAGCACGGACTTGAGTACCGGATGCCGGGTCTGCGGCGAGACGTTCAAAAGCGCAGAGGAACTCCGCCTGCATCATAGGAGAGAGCACGCGCGGAAAAGACCTAAGAACTACGGCAAGAAACAGTCTAGCCTCACCTGGCCCACTGAATGCATACATTGCTCGGAGGAGATAGCGAATGCGCGCGATTACTGGGCACACTTCCGGCGCGTTCACCCGGACAAAAACTATCCCATACAGAAGAACTACATCTGCGATATTTGCGGCAAGAGCTTTAGGGGCAACGCGTTCTTGGTTTACCACAAGCGCACGCACACAGAGGAGCGAGCGTTCAAGTGTGCGCAGTGTCCGAAGGCGTTCTTCAACCGCACCAACCTGCAGATGCACGAGAGGACCCACTCCAACGTGCGCCCCCACCCCTGCGCCATCTGCTGCAAGGCCTTCAAGTGCAAGGGTGCTCTTGAACGACACTCACGCAGCCACACAGGCGAGAAGCCGTACGAGTGCGATGTATGCGGTAAAGCGTTCGCGCAGTCCAACACCCGCAAGTTGCACGTGAACACCGTGCACCTTAAGCAGCCCTCGCCCTATATCAGCCGCAACCGCCGCGAACGTCGCAACCGGCTCACGCACCAAGTCTACTAA
- Protein Sequence
- MVPPGLTEVIKPKAKRGRPRKIVDASMVVKKPKPRRTRNTGGVPDDELDIEEYVTVIKLSVEEQIEEITSRQLSSNFQNAPFKCDLCFKGFIDTHAWKHHVGKHDPSAGELQCSICKFRFKTKRTLQKHVTNHEKKYACKACPYVSKTRTQAKQHQRWHKGVTYKCQYCDEISTLFVSVGYSYAPQKTVLRKCASVDDAAHATVTRLLFTAKPVSLSRNSLAHGRRRGIKAEHSKDGGLYCEQCDVKFVSVEAWKRHMVTSVKHTQSTDLSTGCRVCGETFKSAEELRLHHRREHARKRPKNYGKKQSSLTWPTECIHCSEEIANARDYWAHFRRVHPDKNYPIQKNYICDICGKSFRGNAFLVYHKRTHTEERAFKCAQCPKAFFNRTNLQMHERTHSNVRPHPCAICCKAFKCKGALERHSRSHTGEKPYECDVCGKAFAQSNTRKLHVNTVHLKQPSPYISRNRRERRNRLTHQVY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -