Basic Information

Transcription Factor Domain

TF Family: zf-NF-X1
Domain: zf-NF-X1 domain
PFAM: PF01422
TF Group: Zinc-Coordinating Group
Description: This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 0.31 3.5e+03 -1.5 0.6 4 10 18 24 17 24 0.84

2 8 2.3e-10 2.6e-06 27.7 11.0 1 18 30 47 30 48 0.97

3 8 0.31 3.5e+03 -1.5 0.4 6 10 77 81 76 83 0.73

4 8 2 2.2e+04 -8.2 12.2 10 18 95 104 84 105 0.74

5 8 1.2 1.3e+04 -3.3 0.7 15 18 131 135 130 136 0.61

6 8 2.7e-08 0.0003 21.1 4.0 1 16 141 156 141 163 0.93

7 8 0.0012 13 6.2 8.5 1 18 173 193 173 194 0.75

8 8 0.43 4.8e+03 -2.0 0.1 8 12 210 214 209 214 0.76

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	0.31	3.5e+03	-1.5	0.6	4	10	18	24	17	24	0.84
2	8	2.3e-10	2.6e-06	27.7	11.0	1	18	30	47	30	48	0.97
3	8	0.31	3.5e+03	-1.5	0.4	6	10	77	81	76	83	0.73
4	8	2	2.2e+04	-8.2	12.2	10	18	95	104	84	105	0.74
5	8	1.2	1.3e+04	-3.3	0.7	15	18	131	135	130	136	0.61
6	8	2.7e-08	0.0003	21.1	4.0	1	16	141	156	141	163	0.93
7	8	0.0012	13	6.2	8.5	1	18	173	193	173	194	0.75
8	8	0.43	4.8e+03	-2.0	0.1	8	12	210	214	209	214	0.76

Coding Sequence: ATGGGTCTCATGCCATTGATCCTCTATTTTTCAGGTTGTATTGACATTGATCACGATTGCCCATTGAAGTGTACCTATACGCTATCCTGTGGAAAACACAAGTGTTCAAACCTTTGTCACAAAGGACGATGTTTGCCGTGTTATTTGAGTTCTTTTGAAGAGCTTTATTGCGAATGTGGTGCAAATGTGATATATCCACCGGTTCCATGCGGCACTAAGAAGCCTGCATGCGATCGCCCATGCTCTAGACAGCATGCGTGCAACCACAAAATTATGCATAACTGCCATTCAGCCCCTGTTTGCCCACCGTGTATGGAATTCACGACCAAATACTGCCATGGCAAGCATGAACAACGAAAAATTATTCCTTGTTCGACCAATTCATTCAGCTGTGGGCTTCCTTGCAATAAGCCACTCAAATGCGGTGATCATTTTTGTCTGAAGACATGTCATGAGGGAAATTGCGAAACTGAAGCTGATATTTGCAAGCAAAATTGTAAGAAAGCTCGTTTGCTTTGCTCGCACCGATGTAATGCTCCATGTCATGTTTCAAACAAAGATTGTCCAGAAACACCGTGCCGTGAAATGATCGAAATTCTTTGCCAATGTGGTTTACGTAAGCAAATGCGTAGTTGTCATGAATATTCTTCAGAATTCAAAAAAATTGCAACCGCTCAGTTGGCGTCAAGTGTGCAACAAATGCAAAATGGTGGAACTATTGAATTAAGCGATATTCTAGGCCCCATTAAATTATCGAATAACAAAACTTTGGAATGCAATGAAGAATGTCGAATGGCTGAACGAAATCGTCGTTTGGCCATCGGATTACAAATTCGTAATCCAGATACGGCATCAAAATTCAGTCCAAAATATTCGGATTTCATTCGAAACTGGGCTAAAAAAGATTCCAAATTGGTAACAATGATCCATGACAAGCTTACGGAATTGGTAAAATTAGCAAAAGAAAGCAAACAAAAATCCCGAAGTCATTCGTTTCCAATAATGAATCG
Protein Sequence: MGLMPLILYFSGCIDIDHDCPLKCTYTLSCGKHKCSNLCHKGRCLPCYLSSFEELYCECGANVIYPPVPCGTKKPACDRPCSRQHACNHKIMHNCHSAPVCPPCMEFTTKYCHGKHEQRKIIPCSTNSFSCGLPCNKPLKCGDHFCLKTCHEGNCETEADICKQNCKKARLLCSHRCNAPCHVSNKDCPETPCREMIEILCQCGLRKQMRSCHEYSSEFKKIATAQLASSVQQMQNGGTIELSDILGPIKLSNNKTLECNEECRMAERNRRLAIGLQIRNPDTASKFSPKYSDFIRNWAKKDSKLVTMIHDKLTELVKLAKESKQKSRSHSFPIMN

Sequence clustering based on sequence similarity using MMseqs2