Mdes020283.1
Basic Information
- Insect
- Mayetiola destructor
- Gene Symbol
- -
- Assembly
- None
- Location
- GL501495.1:881857-883981[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 2.5 2.1e+02 3.0 0.3 2 21 294 315 293 318 0.85 2 9 0.00052 0.044 14.6 4.7 1 23 350 373 350 373 0.96 3 9 0.00028 0.023 15.4 3.8 1 23 381 404 381 404 0.98 4 9 0.0025 0.21 12.4 0.0 1 23 412 437 412 437 0.96 5 9 0.23 20 6.2 1.9 2 23 444 466 444 466 0.95 6 9 0.00098 0.082 13.7 2.3 2 23 474 495 473 495 0.98 7 9 3.2e-05 0.0027 18.4 1.2 2 23 501 523 501 523 0.96 8 9 2.5e-05 0.0021 18.7 1.1 1 23 536 558 536 558 0.96 9 9 4.9e-05 0.0041 17.8 3.4 1 23 565 588 565 588 0.98
Sequence Information
- Coding Sequence
- ATGGAAACTACGATTTGTGAAGAAACAATGGAAACAAAACCAATACCAGAAGATAAATTATTGTTATGCCGTTTGTGTTTAGCAAATGGATTCAATTCAACGTTTATCATTCAGAGTCCAGACAATGAGACAATTCTCACAAAATATAACATTTCATTTATGAAAAAAGATTTAAGAATGGCCGACGATGAGTTTCTAATGCACATATGCAAAATGTGTTGGAACAAAGTCATCGAATTCAAGCAATTCTATGAACAAATTGAAAACATCCAAAACGTTTACGAAAAGCATTTCTTAAAAGATGATGGACAATTTGTTTCGTTCGATGATCCAAGCCAATATTATATGGAAGTGGAAAGCATTCGGAATAGTAGTCAATTCAAATGTGAATTGAATGAAACGGTGCTCGATGACGATAAGAAATCCACATATCTTGAACCATTTTGTACGATAAACGTTGATTTTGAAAATGATTGCGAACATTTGGCCGAAACGGCAGACCTCAAGCATAATAATTCGAATGAAGAACCATCGGCTAATTTGGAGAATACTGAAGTGGAAATAGTTGAATGTAATGAGCGTAAAATTGACGAGACGGAAAACAGCAAAGATGTTTTATTTAGTGATAATGAAAGTGAAAGAAACTTTGAAACATCATATTCTGATGATGAATATGATTACAATGGATCCGATGACACATCAGAAGATGAAATCGACGAAAAGCCAAAAAAACGAACCAAAACATCGCCAAAATTGGATAAAAAACCACAACCAAGAGCATCCAGGCCATCGAATAAATCCAAAAGCAAAATTACCGTACGAGCAACGATGGATTTTCTTGGCGAAGACACACAGAAATTGTTACGTTATGTTCAATTGAAATGTGATATTTGCAGTGACAATCGAACATTCGAATCATTTTCCGATATTCAAGTGCATTTTTCCGATGCTCACAATCGTGCCGGATACGTAATATGTTGTAATAGAAAATTTCGACGCATTGGACGAGTTCTGCAACATTGTACTTGGCATGATAATCCAGAGGCTTTTAAATGCGATGAATGTAGTAAATGCTTTCAAGACAATGTTTGTTTACGGGATCATATAACCAGTATGCATGTACCGAATGATAAACGTCATTATCAATGCGATCAATGCAGCAAATTATTTGCTAAAAAGCATTTGTTGAACACTCATCTCAAAATGAAGCATACCGTGAAGGAAGAGCGACCGTATGTGTGCTCTGAAATGGAATGCGGCCAACGATTTGTTTTGCCAGCCTATTTACGTTTACACGTCGAAAAGGTTCACAACAAATCCGATTCACGAGTTTGTGATGTGTGTGCAAGATTTTTTAAATGCTCCAAATCCTATGAACGCCACTATCAAGTCGAACACACGAATATTGATCAGCGAGTCCAATGTGACCTCTGTCGAAAATGGTTCAAACATTTGGATACGTTAAAAGATCATATTCGTCGTCATTATGCGGCAACAGAAACATGCAAATATTGTGGCCGTGTATCGAGCAATAAGAAATCGTTGAGACTTCATGTCCGAAATGTTCATGCTGATATTGATAGTTCAGTTAAAACTAGAAATGAATTTCCCTGTTCGGTGTGTGGAAAAATATTCAAAAAGAAGCAAACATTACGGGAACACACAACATTACATACTGGCGAAGCTTTTTTGTACACCTGCACATTTTGCTCGAAAACATTTAGATCAAGTGCAAATATGTACGCTCATCGAAAACGAACTCATCCAAGGGAATACGAAGAGAAGTGTGTTCTTGCCAAAATGCAAAAAACTTGA
- Protein Sequence
- METTICEETMETKPIPEDKLLLCRLCLANGFNSTFIIQSPDNETILTKYNISFMKKDLRMADDEFLMHICKMCWNKVIEFKQFYEQIENIQNVYEKHFLKDDGQFVSFDDPSQYYMEVESIRNSSQFKCELNETVLDDDKKSTYLEPFCTINVDFENDCEHLAETADLKHNNSNEEPSANLENTEVEIVECNERKIDETENSKDVLFSDNESERNFETSYSDDEYDYNGSDDTSEDEIDEKPKKRTKTSPKLDKKPQPRASRPSNKSKSKITVRATMDFLGEDTQKLLRYVQLKCDICSDNRTFESFSDIQVHFSDAHNRAGYVICCNRKFRRIGRVLQHCTWHDNPEAFKCDECSKCFQDNVCLRDHITSMHVPNDKRHYQCDQCSKLFAKKHLLNTHLKMKHTVKEERPYVCSEMECGQRFVLPAYLRLHVEKVHNKSDSRVCDVCARFFKCSKSYERHYQVEHTNIDQRVQCDLCRKWFKHLDTLKDHIRRHYAATETCKYCGRVSSNKKSLRLHVRNVHADIDSSVKTRNEFPCSVCGKIFKKKQTLREHTTLHTGEAFLYTCTFCSKTFRSSANMYAHRKRTHPREYEEKCVLAKMQKT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -