Mdes012080.1
Basic Information
- Insect
- Mayetiola destructor
- Gene Symbol
- -
- Assembly
- None
- Location
- GL501457.1:39055-43669[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.00012 0.01 16.6 0.8 1 23 377 399 377 399 0.99 2 12 0.03 2.5 9.0 1.7 1 23 407 431 407 431 0.96 3 12 0.092 7.7 7.5 0.2 5 23 443 462 442 462 0.93 4 12 0.0018 0.15 12.9 0.3 3 23 474 495 473 495 0.97 5 12 6.6e-05 0.0055 17.4 0.3 1 23 521 543 521 543 0.95 6 12 6.5e-05 0.0054 17.4 3.6 1 23 549 572 549 572 0.97 7 12 0.00012 0.01 16.6 0.8 1 23 932 954 932 954 0.99 8 12 0.03 2.5 9.0 1.7 1 23 962 986 962 986 0.96 9 12 0.092 7.7 7.5 0.2 5 23 998 1017 997 1017 0.93 10 12 0.0018 0.15 12.9 0.3 3 23 1029 1050 1028 1050 0.97 11 12 6.7e-05 0.0056 17.4 0.3 1 23 1094 1116 1094 1116 0.95 12 12 6.5e-05 0.0054 17.4 3.6 1 23 1122 1145 1122 1145 0.97
Sequence Information
- Coding Sequence
- ATGGCTGACCGAACGGAAGAAGTTCTAAATGGAATCGATTTTGATTATGTTGGCAAAATAATAAAATATTTATATTTATCGGTTTCCAAAAATGATCCATACTTAAAGACAGTATGTTGGATGTGCTCGCAAAATTTGGAAACGTTTCATCGTTTCTATGGAAAGATTAATGAGATTCAAAGATCAACATTGAAGGCAGATTATGAAAGAATTGCAATTAAACAGCACATTGATGGTGATCTATGTTTGCATGTGGATGGTGTGTCAAATGGTGAATCCGATAATAAAACAGTAATCGATGATGATGGGAATATGTATGAAATAATAATCAGTTCAGTTGAAAATGATGTAACTTTAAAAGACGATGACACCGAAATGGAGGAATATGAATTACTGGAAGTGGATGTTTGCGACAATGAATTATCATTCGATGGCAAGCAAGCACTTAACGAAATACACGAAACAACAAATTCTGCAGGCGATGATGAGATTGATTTGGCTGTCGCAAGCAATAACCAAAAACAAGATATTTTGATGAAAAACCACAATAATGAAGCACAACCAAGTGCAGCACTTCATTCGACAAGAAGATCGAATAGATTACAAAAGCAATCGACCGAAAAAATTGGTGCCGTTGAGTTACGATCTAAACTTAAGCGAAAGCAGAACGAAACATTGCATCAATCAAAGCGGAGAAAGAAATCCATTGAAGCAATAGAAAGCAAAAGCTTAACCGTAGCCGAATCTGAAAATCACCAACAATATGATAATGATGATGTCCAAGAAGGTGAAAGTGATGATGAATTTCCAAATGCTGCACGTCAATCAGATGATGAAGATTGGCCATCACAAATGACTCTTGATGAATTCCCAAAGGAAATTATCAAAGACGGACTTTTACTCATCAAGGGCAAACAATTAATGTCAATGATTTGTCGATTTTATAATTTAGAATGTTTAAAGTGCAAAAAAATTAAAAAGAAACGACGCTTTCGACATCTGAATGCATTATTCGACCATTACAAAAATCATCATAAAGAGCCGGGATATTTGGAATGTTGCCAAACAAAATTGGTTCGTCAACCGGCTATAATAATGCATATGGCACGTCATCTCCAGCCAAACGCATTTAAATGCGACGAATGCGGCTACATTGTGACACGACCACGATTCTTACAAAGTCATAAACAAACCCATTTGCCTGAAGATCAAAAACCCTATGCTTGTCCGCATGATGGCTGTACACGCAAATTTTGCTGGAAAAGTGCACTTCGAATTCATTTGATTTCGCATCAACCGGTAAATGAAAGAAAACAATATATTTGTCAATGTGGCCGAAGTTACGATACACCCGGTGGTCTTTCGACTCATAAAAAGCAGGCTCATGGTCCAAAGTCACCGAATGCGTCATCGAATATATGCCATTTGTGTGCCAAGAGCTATGCCACCAGAACCGGACTATTAGAGCATATGGCAACAATTCATCAGCCACGGGAAAAGAATCAAATTCAATTTTTATTAAATCGTCATTTATTGACCCAACACTCAAATGAAAAGCCATTCATATGTAATTTATGTGGACGATCATTCAAAATGAAGAGAGCATTGACAGTACATGTGGCTCAACATGGTTCGAAAACAGTTTTCCAATGTCCATTCTGTGATCGTTCATTCAATTCATCGACTAATTTTTATACCCATCGAAAGAATTCCCATCCAAAAGAGCTCAACCAATTGTTGCAACAGAAAGCAGAAAATCAACGACGAAAAAGAATCGAAGCTGGCATCGAAGACGATCCGAATGATGGCAACAATAGCTTTGATCCAAATGAGGATGAAATTCAAAGATCAACATTGAAGGCAGATTATGAAAGAATTGCAATTAAACAGCACATTGATGGTGATCTATGTTTGCATGTGGATGGTGTGTCAAATGGTGAATCCGATAATAAAACAGTAATCGATGATGATGGGAATATGTATGAAATAATAATCAGTTCAGTTGAAAATGATGTAACTTTAAAAGACGATGACACCGAAATGGAGGAATATGAATTACTGGAAGTGGATGTTTGCGACAATGAATTATCATTCGATGGCAAGCAAGCACTTAACGAAATACACGAAACAACAAATTCTGCAGGCGATGATGAGATTGATTTGGCTGTCGCAAGCAATAACCAAAAACAAGATATTTTGATGAAAAACCACAATAATGAAGCACAACCAAGTGCAGCACTTCATTCGACAAGAAGATCGAATAGATTACAAAAGCAATCGACCGAAAAAATTGGTGCCGTTGAGTTACGATCTAAACTTAAGCGAAAGCAGAACGAAACATTGCATCAATCAAAGCGGAGAAAGAAATCCATTGAAGCAATAGAAAGCAAAAGCTTAACCGTAGCCGAATCTGAAAATCACCAACAATATGATAATGATGATGTCCAAGAAGGTGAAAGTGATGATGAATTTCCAAATGCTGCACGTCAATCAGATGATGAAGATTGGCCATCACAAATGACTCTTGATGAATTCCCAAAGGAAATTATCAAAGACGGACTTTTACTCATCAAGGGCAAACAATTAATGTCAATGATTTGTCGATTTTATAATTTAGAATGTTTAAAGTGCAAAAAAATTAAAAAGAAACGACGCTTTCGACATCTGAATGCATTATTCGACCATTACAAAAATCATCATAAAGAGCCGGGATATTTGGAATGTTGCCAAACAAAATTGGTTCGTCAACCGGCTATAATAATGCATATGGCACGTCATCTCCAGCCAAACGCATTTAAATGCGACGAATGCGGCTACATTGTGACACGACCACGATTCTTACAAAGTCATAAACAAACCCATTTGCCTGAAGATCAAAAACCCTATGCTTGTCCGCATGATGGCTGTACACGCAAATTTTGCTGGAAAAGTGCACTTCGAATTCATTTGATTTCGCATCAACCGGTAAATGAAAGAAAACAATATATTTGTCAATGTGGCCGAAGTTACGATACACCCGGTGGTCTTTCGACTCATAAAAAGCAGGCTCATGGTCCAAAATCACCGAATGCGTCATCGAATATATGCCATTTGTGTGCCAAGAGCTATGCCACCAGAACCGGACTATTAGAGCATATGGCAACAATTCATCAGCCACGGGAAAAGAATCAAATTCAATGTATGGAATGTGGCCAGTGGCTTATGAATGTTAGATGCCTAAAAACTCACAAAATACTACACAGTAATATTGAATTGCGCTGCGATCAATGCGATTACCCATTCATATGTAATTTATGTGGACGATCATTCAAAATGAAGAGAGCATTGACAGTACATGTGGCTCAACATGGTTCGAAAACAGTTTTCCAATGTCCATTCTGTGATCGTTCATTCAATTCATCGACTAATTTTTATACCCATCGAAAGAATTCCCATCCAAAAGAGCTCAACCAATTGTTGCAACAGAAAGCAGAAAATCAACGACGAAAAAGAATCGAAGCTGGCATCGAAGACGATCCGAATGATGGCAACAATAGCTTTGATCCAAATGAGGATGAAGTGATAATTCTTCAAAATTGA
- Protein Sequence
- MADRTEEVLNGIDFDYVGKIIKYLYLSVSKNDPYLKTVCWMCSQNLETFHRFYGKINEIQRSTLKADYERIAIKQHIDGDLCLHVDGVSNGESDNKTVIDDDGNMYEIIISSVENDVTLKDDDTEMEEYELLEVDVCDNELSFDGKQALNEIHETTNSAGDDEIDLAVASNNQKQDILMKNHNNEAQPSAALHSTRRSNRLQKQSTEKIGAVELRSKLKRKQNETLHQSKRRKKSIEAIESKSLTVAESENHQQYDNDDVQEGESDDEFPNAARQSDDEDWPSQMTLDEFPKEIIKDGLLLIKGKQLMSMICRFYNLECLKCKKIKKKRRFRHLNALFDHYKNHHKEPGYLECCQTKLVRQPAIIMHMARHLQPNAFKCDECGYIVTRPRFLQSHKQTHLPEDQKPYACPHDGCTRKFCWKSALRIHLISHQPVNERKQYICQCGRSYDTPGGLSTHKKQAHGPKSPNASSNICHLCAKSYATRTGLLEHMATIHQPREKNQIQFLLNRHLLTQHSNEKPFICNLCGRSFKMKRALTVHVAQHGSKTVFQCPFCDRSFNSSTNFYTHRKNSHPKELNQLLQQKAENQRRKRIEAGIEDDPNDGNNSFDPNEDEIQRSTLKADYERIAIKQHIDGDLCLHVDGVSNGESDNKTVIDDDGNMYEIIISSVENDVTLKDDDTEMEEYELLEVDVCDNELSFDGKQALNEIHETTNSAGDDEIDLAVASNNQKQDILMKNHNNEAQPSAALHSTRRSNRLQKQSTEKIGAVELRSKLKRKQNETLHQSKRRKKSIEAIESKSLTVAESENHQQYDNDDVQEGESDDEFPNAARQSDDEDWPSQMTLDEFPKEIIKDGLLLIKGKQLMSMICRFYNLECLKCKKIKKKRRFRHLNALFDHYKNHHKEPGYLECCQTKLVRQPAIIMHMARHLQPNAFKCDECGYIVTRPRFLQSHKQTHLPEDQKPYACPHDGCTRKFCWKSALRIHLISHQPVNERKQYICQCGRSYDTPGGLSTHKKQAHGPKSPNASSNICHLCAKSYATRTGLLEHMATIHQPREKNQIQCMECGQWLMNVRCLKTHKILHSNIELRCDQCDYPFICNLCGRSFKMKRALTVHVAQHGSKTVFQCPFCDRSFNSSTNFYTHRKNSHPKELNQLLQQKAENQRRKRIEAGIEDDPNDGNNSFDPNEDEVIILQN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -