Mdes020670.1
Basic Information
- Insect
- Mayetiola destructor
- Gene Symbol
- RREB1
- Assembly
- None
- Location
- GL501432.1:544216-549488[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.0001 0.0084 16.8 1.1 1 23 169 191 169 191 0.98 2 13 0.0002 0.016 15.9 0.1 1 23 200 222 200 222 0.98 3 13 5.1e-05 0.0043 17.7 7.4 1 23 228 250 228 250 0.99 4 13 0.96 80 4.3 0.6 1 20 411 430 411 432 0.89 5 13 0.0075 0.63 10.9 0.1 1 23 578 600 578 600 0.97 6 13 3.8e-05 0.0032 18.1 1.0 1 23 609 631 609 631 0.99 7 13 0.00039 0.033 15.0 2.0 1 23 637 660 637 660 0.97 8 13 0.0014 0.12 13.2 1.8 1 23 975 998 975 998 0.95 9 13 7.3e-05 0.0061 17.3 0.3 2 23 1266 1287 1265 1287 0.97 10 13 0.087 7.3 7.6 4.2 1 23 1293 1316 1293 1316 0.96 11 13 2 1.7e+02 3.3 4.5 1 23 1386 1409 1386 1409 0.95 12 13 0.0071 0.6 11.0 0.5 3 23 1458 1478 1456 1478 0.96 13 13 0.023 1.9 9.4 4.5 1 23 1484 1506 1484 1506 0.98
Sequence Information
- Coding Sequence
- ATGGAAAAACGACTTTCAACAACATCTGAATCATCATCTATAGACGGATCAATGGATATCGATCATAAGCAAACCAATGATTTAGTTGCAGCTAATGACATCAGTGCGAATATCAAAATACTATCAAAGTCAGACGCAACGGTAAAACTAGTTGGTTTCGAATCATCGGATAGAGAAACCAGAGAAACACGCCGGAGAAGTCGAAATCACAATGAAAATGATACAGTAACGAGCAATGATGCCGATCATTCAGAAGATAATGTTGAGGCAAATACCGATCCATCAAATGCACATGGAACGATTGTAAGACGAGAAAATTTACGGCAGTTGGAAAATAGCATGATTTCATTGCGAAAAAGTTTTCGTTTCGCTGACCGTGTACCACCTAATATCAACAACAATAATAACAATAATTTAAAATCAAATAATCATTCGAAACGGTCACAACGTATTGGAAGTAATGAAAATAGCGATGGCAGCAATGATAATGGCAAGACGTCACAGTACAGTTGTCCAATATGTGGTGTATGCTCAGCCACACAGCACGACTTCACTGAACACATACGCGGTCACAATAATTCAGATGGAAGCCATAATTATACTTGTCAGATCTGCTTCAAGGTAGTCTCGTCGGCATCATCTCTTGATCGTCATGTCCTGGTTCACACAGGAGAGCGACCGTTCACATGTAAATTTTGCCACGTGACATTCACAACTAATGGAAACATGCATCGTCATATGCGTACGCACAAACATCGGGATGGCTTGTACGAAAGTGAAGGCTCAAATGACTCAAACGCTAGCGGTTCTGGAAATGATGGAAAACGAAAAAATACAGAAGATGTTTATTCGGTGGGTGTGAAAAGACGTCTGAAAACTCTTAACAATAACAACAACGTGATCAACAACAACTCCATTGAGGTGAATAGTCAACCACAACGCTTCTGTTGTCCGGTATGTGTTCGCAATGACTTTTTAACAATGGCCGGCTTGGAAAATCATGTCGACACGGAGCATCCAAGCATTCAGGCCAAATGCCGCTGTTGTGAAGTTGTTTTCAAAAGTTACAAAGCATTGAACGCACATAAATGCTCTGCTGAAAATAAGCCACCACACATTACACAAGGTTTCAAAGATCTCACATTTGTCGATTTTTCAAGTGAGAAATTTCCATTGATTGCAAAGGTTATGTGCGAACAAAGCATTCGTACGCCAATCACCAGTCAAAAGTATGAATGCCAAAAATGCTATCGAGCTTTTCCATGTTCAAGTGCTCTGGATATACACACTGCAAAGTGTGCAGGAAGCGAATCGAAGCATCTGATTTCGTTGCGAAAACGGATGTTGTCTGAAACATCAGATGAAGCTGACACCCGACGACGAGATGACTTTTTCGCTCATCTTGACTTAAAAAACAAAAATGATTCAAATCCAAATGAATTCTATCAATCAACTGAATACGATTCTGATACAGATGGCATAGAGCACAAAAAGTTGCGTAAAGATGATTGGTATTCCTCTATGTCTAAATGTTCCAATGGAGAATACAAAGATTTGGCAGACATTCAATCGATGATCAACGTAAGTTCATCTGGCAGTGAGTTGTTAAGGCAGCTTGATCAACCTATGACTTCAATGGCATCATCCACAGAGCAATTATATTCACGTGATGAGGAAGAGCAACAAGATGCATTTACTGCTGAATTCCGTAAAATGAAATTACGCGGAGAATTCCCATGCAAATTATGTACGGCCGTCTTTCCAAATTTACGTGCGCTCAAAGGACACAATCGCATACATTTAACCGCTGCTGGCTCTGGTCCATTTCGTTGTAATATGTGTCCGTATTCAATTCATGATAAGGCTGCGTTGATTCGCCATATGCGAACACACAACGGGGATCGTCCATACGAATGTGCTATTTGCAACTACGCATTCACAACAAAAGCGAATTGTGAACGCCATTTGAGGAATCGTCATGGCAAAAGTACACGGGATGAAGTTAAACGTGCCATTATTTATCACCCATCTGAAGATTCAAGCTGTGACGATCCAGTGAAAAAGATGCAAATTTTTAATTTATCATTCGAAGAAGACGAGGAAAGACCACCGCAAGATTGTTCTACACCAGTTTCCCAATTGGATGATTCTGCCAATTCTGATAAGATTGCTAAGATTCAAGTAAAAAGCATCGATCAGTTGACACAATACACAAATCAAATCAACAATGCTTCAGATGAAAATGAGATTGAAACTAATCAACAGCCACAAGATTCAAAGCCAATTGATTTGAGCATGGATGTGTTGGATTTAAGCAAGAAATCATCGAATGATATTTTAGGAGCGTCAGACCTGTCAATTTTCGAAAAAAATCAACAATTGATATTAGCACAGCATAAACTGTTTAGTGAGGCTTTTCCGCAAATTGATCCTGCTCATTATTTTCAGTTACAACAATTGTATCGCAATTTGGTATTCCCAACCACTGGACTTCCTTTGCATCCATTTTTCTTGCAAAATCAACTTTTGGCTCAACTACCGACTCCAAACTTTAATGGCATAAAAAATATCATCAAAAATGATATACTTTTAACACCAACCAACAATGTTTATCCAAACAGCATGTTCATAAATCCAATATTTCCAACTCCACCGAATATGCCTCAAACAAATTATTCAGCATCAACATTGCTACAAAAGGCTCTTAAACAGGAATCACCAATACAGAGGAGCATTTCACCTACGAGAGTTCCGCTACCATTGACACCACAAACGCCACGTTCATCCAGAGCACATATGGTACAGAAGCCACAACAGTCACAACAGCCACGATTGTCGAGTCCAGGACCAGTCAAAATGGTTATCAAAAATGGTGTCCTCATGCCTAAACAAAAACAAAGACGATATCGCACCGAAAGACCTTTCGCGTGCGGTCACTGCTCTGCTCGTTTTACACTGAGATCGAATATGGAGCGCCATATTAAACAGCAACATCCACAATATTGGGCTCAACGACAACGCAATGGCCATAGTTTTACTCGCCGGAATAGTAGCAGCAGTTTGACACCATCTTCTACGACAATGCAAACACAATCTGATTTATCGAGTTTTCAACATACAAATATAATTGATAATACAAATGCTTTCAACGCTATATCTGATCAAGTAAAGTTCGCTATTTTGGCCCAACAGCTTAAATGTCGCTCGGACAAAGCTGATTTTGATTCAATGGAACATCAAGAGGAAACTGATGATGGTGACTTTAAAGATGACATTGATGAGCCAAAACTTTTCATCGATGAGGAACAACATCAACTTCAAGATTATTTAGACAAATCAGATGAACAGTCCTTGCAGAGCGAAAATAATGCAGTTGCAAAAAAAATAGCTAAAAATATTCTACTTCAAGCAATGAACGTCGAAACACCGAACGAGAACTTTGATGGAGCGAAACCTACTTCGGCTCACTCTGAAACAAATGAATCACATAAGGAATCTAACCAAGATCAAACAAAACTCGTTTCGAAAAAATTGATTGAGGGTCGATCTCGTGGATCTTCAAAAGACGAGGGTGATTTGGTTTCAATATCAACTCTTGTTGATAACGCTACCAACTCAGTCGGTTTGAACAAATTTTTTCATTCCGATTCGCAATCAAATGAACATAGCGATGAAGAAGGCCTCGTTGCATCCGGTAGTACATCCGAAAGTAACAATTCGGGTCCAGAAGATCTTATTTCAAATCCAACTGAAGGCAAGAAAAAGTCTGCCTACAGTTTAGCACCGAACCGTGTATCTTGTCCATACTGTCAACGTATGTTCCCATGGTCAAGCTCTTTACGTCGTCATATTCTCACGCACACAGGACAAAAACCGTTCAAATGTTCCCAATGCCCTCTGCTTTTTACAACCAAAAGTAATTGCGATCGTCATTTACTTCGTAAGCACGGGGATGTCGACTCAGCTGTATCGCTTTATGTTCCAATCGATGAAGAAATACCAGAACCAATTAAGAAACCAGCATCAGAATGTACAACATCACTAGCAACAAATTTAACCATATCAAATCAACCAATGTTGCCTCAAATTCAGTTAAACATACCACAAATCAAGAATGAGAATCCAGCTCAAGCAAATCAACATGCAGATTTACCGTTCAAATGTCATTTGTGCGATGGTTCGTTCCAGGATCGTTTTTCGTGTTTGGATCATATTAAAGTATATCATTCGCAAGAGTTTGCACTACTAGTATCGAAAGGAGCAATCGAACCAGAAGAGGATGCTCATACAATTTCGGCAGAAGACGATGAAAAGCACGGTGAAAATGGCAATCGTGGAAAATATCCAGATTATGCAAATCGCAAGGTAATTTGTGCTTTTTGCGTACGTCGTTTTTGGTCGACAGAAGATCTTCGCCGCCACATGCGAACACATAGCGGTGAACGTCCATTCAGTTGTCCAGTTTGCATGCGAAAATTCACTTTGAAGCATAGTATGCTTCGTCATCAAAAGAAACATGCACACAATGTCAATTCTAATAATGCACAAAGTGCCTCAGATATATCTGATGATGAACAACAATTTTCCAGAACTCCTCCATCAAAAATTGCATTCGAAAATGTTGCTTCATTGACTGATGCCCTTGTTAAAAAACAAAACTTGACAGAACTGATTACGAAAAAATTTCTCATGAATAAAATATTGGGAGAAACCATTGATTTGGATAGAAAGAAGTTGAACATCGAATCGGGTAAAACTGAAAGTGAGGAAACATCAGAATTAATTGGTAATCTTCTAGGAATAAGCGATTCAAGTATTTTGAATAAAGTACTACTATCATCCGCTGACGAAGCAGCCAAGTTGCTTGGAGTTGATAAATAA
- Protein Sequence
- MEKRLSTTSESSSIDGSMDIDHKQTNDLVAANDISANIKILSKSDATVKLVGFESSDRETRETRRRSRNHNENDTVTSNDADHSEDNVEANTDPSNAHGTIVRRENLRQLENSMISLRKSFRFADRVPPNINNNNNNNLKSNNHSKRSQRIGSNENSDGSNDNGKTSQYSCPICGVCSATQHDFTEHIRGHNNSDGSHNYTCQICFKVVSSASSLDRHVLVHTGERPFTCKFCHVTFTTNGNMHRHMRTHKHRDGLYESEGSNDSNASGSGNDGKRKNTEDVYSVGVKRRLKTLNNNNNVINNNSIEVNSQPQRFCCPVCVRNDFLTMAGLENHVDTEHPSIQAKCRCCEVVFKSYKALNAHKCSAENKPPHITQGFKDLTFVDFSSEKFPLIAKVMCEQSIRTPITSQKYECQKCYRAFPCSSALDIHTAKCAGSESKHLISLRKRMLSETSDEADTRRRDDFFAHLDLKNKNDSNPNEFYQSTEYDSDTDGIEHKKLRKDDWYSSMSKCSNGEYKDLADIQSMINVSSSGSELLRQLDQPMTSMASSTEQLYSRDEEEQQDAFTAEFRKMKLRGEFPCKLCTAVFPNLRALKGHNRIHLTAAGSGPFRCNMCPYSIHDKAALIRHMRTHNGDRPYECAICNYAFTTKANCERHLRNRHGKSTRDEVKRAIIYHPSEDSSCDDPVKKMQIFNLSFEEDEERPPQDCSTPVSQLDDSANSDKIAKIQVKSIDQLTQYTNQINNASDENEIETNQQPQDSKPIDLSMDVLDLSKKSSNDILGASDLSIFEKNQQLILAQHKLFSEAFPQIDPAHYFQLQQLYRNLVFPTTGLPLHPFFLQNQLLAQLPTPNFNGIKNIIKNDILLTPTNNVYPNSMFINPIFPTPPNMPQTNYSASTLLQKALKQESPIQRSISPTRVPLPLTPQTPRSSRAHMVQKPQQSQQPRLSSPGPVKMVIKNGVLMPKQKQRRYRTERPFACGHCSARFTLRSNMERHIKQQHPQYWAQRQRNGHSFTRRNSSSSLTPSSTTMQTQSDLSSFQHTNIIDNTNAFNAISDQVKFAILAQQLKCRSDKADFDSMEHQEETDDGDFKDDIDEPKLFIDEEQHQLQDYLDKSDEQSLQSENNAVAKKIAKNILLQAMNVETPNENFDGAKPTSAHSETNESHKESNQDQTKLVSKKLIEGRSRGSSKDEGDLVSISTLVDNATNSVGLNKFFHSDSQSNEHSDEEGLVASGSTSESNNSGPEDLISNPTEGKKKSAYSLAPNRVSCPYCQRMFPWSSSLRRHILTHTGQKPFKCSQCPLLFTTKSNCDRHLLRKHGDVDSAVSLYVPIDEEIPEPIKKPASECTTSLATNLTISNQPMLPQIQLNIPQIKNENPAQANQHADLPFKCHLCDGSFQDRFSCLDHIKVYHSQEFALLVSKGAIEPEEDAHTISAEDDEKHGENGNRGKYPDYANRKVICAFCVRRFWSTEDLRRHMRTHSGERPFSCPVCMRKFTLKHSMLRHQKKHAHNVNSNNAQSASDISDDEQQFSRTPPSKIAFENVASLTDALVKKQNLTELITKKFLMNKILGETIDLDRKKLNIESGKTESEETSELIGNLLGISDSSILNKVLLSSADEAAKLLGVDK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -